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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-29 05:59:58, GGGenome : C. elegans genome, WS220/ce10 (Oct, 2010)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chrI:5768170-5768184
GTAAGTACTGCAAGCTACAGTAATCCTGGT5768170TATGTTGTCAATGAAGGAAATTGATTTATTTTTGGGATTTTCCAG
chrI:6458664-6458678
TAGTTTTCCAAAATTAGGTTTTTGTCATAA6458664AATGTTGTCAAAGAAAAAACAGGACAAAATAGTTAATTGTTGTTT
chrI:6501520-6501534
TACCCTTCATCATAACGGGATAAGTTACAC6501520AATGTCGTCAATGAATATTTACAACTTGGCGCATTTTTTACTTTA
chrI:7717336-7717349
GGTGATCTCAAAAACATTCTTGATACCAAA7717336AAT-TTGTCAATGAAAAGTCCGAGAAACCAAGAGGTACAAAAGTC
chrI:8590173-8590187
GTATGTAATGAGTTCGGAATTGCTTGCATT8590173AATTTTGTCAATGAACTGTTACCAAGGTAACCATAAATGTGACTG
chrI:10569944-10569958
GAAGTGCTAAACTTCACTGTTAAATCATTT10569944AATGTTTTCAATGAACTATATATACTCCCCTATCACATATCGATT
chrI:11629724-11629737
GTTTTTTTTCTTCTTCAAATGAACATGAAA11629724AATGTT-TCAATGAATGAAATTAACTTGTTTATTTTTCAGGTCCA
chrII:6605792-6605805
GGAAGTTGATCAATGTGTAGAAGACGTTCG6605792AATGTTGTC-ATGAAGCTGAAAATTAAGTCAAACGATTAGATTTT
chrII:9472327-9472341
GTTCTCTTTAAATCAAAATTTGAAATTTAA9472327AATGTTGTCATTGAATTATTTTATGAGCAAAAATGAATAATTTCA
chrIII:2505331-2505345
TCCTCATGAGTATAATCATTGTATCTCATC2505331AATTTTGTCAATGAATCAATATCAGTGACTTTTGAATGATCTCTA
chrIII:2795028-2795042
TATAGTTTCTTTTTTTGCTTCTTAAAAAAA2795028AATTTTGTCAATGAACGAATTGTTTACAACCGCACTCTGGCATTT
chrIII:3041678-3041692
ACGTATCTCAGCGGGAGAAATAGTTACAAA3041678AATGTTGTCAATGAAGTACTTGTAGAGCTCAAAATTTCCTACAAT
chrIII:6842337-6842351
ATAACTGGATCTGTATTAGTTCTCGACACA6842337AATGTTGTCTATGAAATTGACGTTGTGCATGATGTAGTTACAATT
chrIII:8316414-8316428
CTTTCTCGATTTGATGTAGATGGTTTTCTA8316414AATGTTGTCAACGAAGATGATGATGGATGTCTAGATGGACCATTT
chrIII:8649012-8649027
CATGGCACACAATAATTACCTGGATCTTGA8649012AATGTTGTTCAATGAATGTAATGCTCAACATTACGAAAATTTAGGT
chrIII:9178921-9178934
GGCACTTTGGTGTAGTAGTTTTATTCCTTA9178921AATGTT-TCAATGAAATATTAATTAGAATAACGAGAATATTTGAG
chrIV:1105981-1105995
TCATAACTCAGTGGAGAGAAGAGCTACAAA1105981AATGTTGTCAACGAACAAAATGTAGGAATTGTTACGTAGAATAGA
chrIV:1802525-1802538
TTTTGGCACAACTGACAGAAGCGGAGATAT1802525AAT-TTGTCAATGAAAATTGTAGTAAGAAGAATACCTACGTGCCT
chrIV:3822471-3822484
AATTATGAATTTTTGATACAATTTGCCGAA3822471AATGTT-TCAATGAATTTTCAAAAGCTCAACAAAACTTGGTGAAA
chrIV:3979699-3979713
GGAACCAGCACTCTCTAATATTATTAGGAT3979699AATGGTGTCAATGAATATAATTAAATCAGTGATCAAAAAGTTGAA
chrIV:5233965-5233978
AAAGAAAAAAATGAACTGTATTCTAACCGG5233965AATGTTGT-AATGAATGATTTTCTGCCTCCATGCTCATCTTGTTT
chrIV:7706181-7706196
ATAATTGTATGTATTTATGCATTTTTTTTA7706181AATGTATGTCAATGAATCTTTAATTTAAAAAAAACATTCTCAATTC
chrIV:8437449-8437463
AATCATCTGAAAATTTTCTCATAAATTAGC8437449AATGTTGTCAATGAGTAATTATTTTTCAGATGGATCGAAGCTCAA
chrIV:9134152-9134165
CGATGCAAGTGAACAACAATCAAATCTGTA9134152AATGTT-TCAATGAATGCTACTTATATCCTACAAAACTTACGATT
chrIV:12469771-12469784
TCCATGAGAACATCTCATATGACCATTCAG12469771AATGTTGTCAA-GAAAAAGGAATTTCTCCGCTATGCCGTGGAATG
chrIV:12620689-12620703
GCGGGTCCGAGATGAAGCAGAACAACGGGG12620689AATGTTGTCAATAAACTTTTTTGAGGGAGAAAGTGGATTATTTAA
chrIV:13258829-13258843
GTCTGCCAAAAATGTGACCAGTTGTTCAAG13258829AAAGTTGTCAATGAAAATTACAAAACGAATTAAAAAATTAAAAAT
chrIV:14655764-14655777
AAGTTTTTCTTCTTCAGATGAACATAAAAA14655764AATGTT-TCAATGAATGAAATTAACTTCTTTCTTTCTTCAGGTCC
chrIV:15441453-15441466
ACATTAAAAGCACGTTTCCTAGGCTGTGGT15441453AATGTT-TCAATGAACTGTGAAATATGGACTAAAATCAGAGGAAG
chrIV:15663062-15663076
AACATGATTGTTTCCTGAATTTTTAATAAT15663062AATTTTGTCAATGAAAAACGGGAAAAATATTTGAAAATTGCTGAT
chrIV:16619347-16619360
TTTTATGAGTTTAGGATTTTAATAGTTTTC16619347AATGTTGT-AATGAAATTTTAACGGAAAGATCATTTAAACTATTG
chrV:2331335-2331349
AATGGCTAAATATTTTCAAATTACTGAACG2331335AATGTTGTCAGTGAAAATTGTCTATTAATTTGGCTGAAAAATATT
chrV:2805802-2805816
AATGACAATGAGTGATTGAAAAGTGAGAAA2805802AATGTTGACAATGAACTTTCCGTTCGCGTTCTCCACCTACCTATC
chrV:3759243-3759257
CACACGTTTCTGAAGAAGGTACTCCTTTCG3759243AATGTTGTCTATGAAATCCTTGCTTTTATTGGCGATATTGATTTT
chrV:5327913-5327926
TTCGGCTGGAATTTTTTTAAAATCAATATA5327913AATGTT-TCAATGAAAGTATCTACAAAATATTTCCCCGATATGAC
chrV:5931131-5931145
TTCGTGTAAAGGAAACATTTTTAAAATAAT5931131AATGTTCTCAATGAAAATTCAGCCTAAAATTTGTAGTTTTAATTT
chrV:7565082-7565095
CAGTCGTAAAATTCGTCCATTTTGGTTCAT7565082AA-GTTGTCAATGAAATTGATGATATTATGTCATAACTTAATGGA
chrV:8506275-8506289
TCAGGCACATTTGGGGTGTGGGAACCCGTG8506275AATGTTGTCAAGGAACCACTGAGTGGGTGTTTTTGTGAGAAATGG
chrV:9419560-9419573
TCGGGGGGAAAACTTATAACATAGTCATAT9419560AATGTT-TCAATGAAGCCGTTTAGAGAAAAGGCAAGAAAACGCCA
chrV:11051655-11051669
CTGTGGAATAACTACAATTAGTACATTCAA11051655AATGTTTTCAATGAATGTCCGACAATCACTTACTTTTTTTGATGA
chrV:15143240-15143253
ATAATCTAACTCACGCAGTTTTTACATCAG15143240AAT-TTGTCAATGAAAACGGCTCTTTTGAAAACTCACACAAAGAA
chrV:15246706-15246719
CACCATTACCTATTTTTTGGCTTGCACCTG15246706AATGTT-TCAATGAATCAAAGTTCACTGAAATGACTGATGTTTGG
chrV:15918562-15918577
TTTTCATATTTTTTTTAAAGTTTAGGTGTC15918562AATGTTGTCATATGAAATTAAGGTAACCGTTTGTCGAAAGTTGATG
chrV:16195514-16195528
TTTTACGCTCTAGATCCGGAAAAGAGAAAA16195514AATGTTGTTAATGAAAATAAAATTGTTGTTTTTTTTCTATTTTTT
chrV:20096415-20096430
TCGGACACGATTTTGAGCGTACAGACCCAA20096415AATGTTGTCAAATGAACGAATTTCGTAATGAAACTGTCCAAACATT
chrX:3475006-3475020
TCAAGTTGTAAGCAGATCCACTTTGTAACA3475006AATGTTGTCATTGAATACGAGAATGCTCAATGAGTCTTCTCCTTC
chrX:4897404-4897417
CAACTCATAAAGCGCTTTGTATCCTCGGGC4897404AATGTTGTCAA-GAAGAAGCCTGAAGTGATTTCTGTTTGAAAGTT
chrX:7160983-7160997
GAGGAGACAAAGCTGCAGAACAAAATCACA7160983AATCTTGTCAATGAAACGTTTAATTGTATAACTACGGTGATCTCA
chrX:7975022-7975035
ACCTAGATATAAATCCGAGTTGCATTGAGC7975022AATGTTG-CAATGAAGTTTAGCCAAGTCGCCTAAGGGTTATTCCT
chrX:8013235-8013248
AGAACATATGAAAAACACAAGGATTAACAG8013235AATGTT-TCAATGAATTGTATTTTCTTAAAATAATTTTAATAGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ce10/1/AATGTTGTCAATGAA
lang : en | db : ce10 | k : 1 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.76:28109/match?q=AATGTTGTCAATGAA&k=1&no_gap=0&offset=0&limit=50
0.097 | 0.015 | search_minus_done; http://172.18.8.76:28109/match?q=TTCATTGACAACATT&k=1&no_gap=0&offset=0&limit=0
0.098 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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