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Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-03-29 16:08:26, GGGenome : C. elegans genome, WS220/ce10 (Oct, 2010)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chrI:120624-120638
AGCTTGGCCGTTGAGGTAGAGCTACCAGTG120624TTCATTGCCAACATTTTCGAGCAAAGCAGGCAGTACGAGACCGAA
chrI:2257211-2257225
ATTTCCTTGGCATTCTCATCTTTTCCCATC2257211TTCATTGTCAACATTGAACCCTTTCCATACTTGGATTTCAGATGC
chrI:3111984-3111997
GGACCTGAAGAAAGAAAGAAGTTAATTTCA3111984TTCATTGA-AACATTTTTTATGTTCATCTGAAGAAGAAAAACTTA
chrI:3500987-3501000
AAGGCAAAAATATTTAATCGCGTTTGGTTC3500987TTC-TTGACAACATTTATAGTTTTAGAGTTGCTCAATTGATTGAA
chrI:9085512-9085525
GGACCTGCAAAAATAAAGAAGTTAATTTCA9085512TTCATTGA-AACATTTTTCATGTTCATTTGAAGAAGAAAAACTTA
chrI:9674739-9674753
AAGAGCAAAAGACGGAGCCTTTGCCTTCTT9674739TTCATTGAAAACATTCATGATGCTCTGTTTAATCGCCTGGAACTC
chrI:11919210-11919224
TTTGTAGTTTTTTCGAAGAAAATCAGATTT11919210TTCATTGACAAAATTTTTTTTCTGCAAAAATTCTGAAAAATAGTG
chrI:12558927-12558940
TGCTAATTATATATATGTCTAACTTTTCAC12558927TTCATTGA-AACATTTTCTAGTTTTCTGGCTCTTTTCTCATAATG
chrI:14722673-14722687
TCTAAAAAATAACAAGGAACTACATATAGA14722673TTCATTGAAAACATTCTGATTTTTCACAAACCTGTTCAACACAAA
chrII:1650581-1650595
TAATTTGCTAATTATCAGAATAAAAACTTT1650581TTCATTGAGAACATTTATTTGGGAAACAAATAGCGACACGAAAAA
chrII:1651842-1651856
TGTTGTTATGATTATCAGAATAGAAACTAT1651842TTCATTGAGAACATTTATTTTGGAAACAAATAGCGACACGAAAAA
chrII:4508789-4508803
ACCAATCCAAACAGTCCATTCTCTCTATTC4508789TTCTTTGACAACATTTATTTTTCAGTTGGATAAAAGCAAAAAACT
chrII:6008617-6008630
ATGGACCTGAAAATAAAAAAGTTAATTTCA6008617TTCATTGA-AACATTTTTCATGTTCATTTGAATTGAAAAAATTGA
chrII:12512868-12512882
CTATCAAACCAGAGCTCGCAGTATAATTAA12512868TGCATTGACAACATTTCAAATTCTATTCTTCTCTGCAACATGTAT
chrII:12873009-12873023
GGAAATACCAAATTTGTAACTATTCACTAG12873009TTCATTGACAACTTTCGGAAAAAAAATCGGAAAAAATCTACAGAA
chrII:14889761-14889774
AAAGTAAACACAAACAACATTTTCCAAAAC14889761TTCA-TGACAACATTCTCAGCTAATTTTAGAGCTACTTGACTTCC
chrIII:5229468-5229482
CGTGACCAGGAAGGACAAGATGTGCTTCTT5229468TTCATTGACAACATTTTCCGTTTCACCCAGGCTGGATCTGAAGTG
chrIII:8269610-8269624
ATATAAATTAAATTTTTGGCGAGTAATCGC8269610TTCATTGATAACATTTTAAGCGGAAATTTGAATTTTAGTAACTGT
chrIII:11288100-11288114
CTACTAATTTTTTTCACCTACCGAAATAAG11288100TTTATTGACAACATTCGCATGGCCAGAGGCAGCGGCAAAATGCAA
chrIII:13708112-13708126
TAAATCCAAAATTTTGGAAATGCTGATTTT13708112TTCATTGAAAACATTATTTTTATTTTTTCCACAAAAATGTGGATA
chrIII:13740785-13740798
TGGACCTGAAAAAAAAACAAGTTAATTTCA13740785TTCATTGA-AACATTTTTCATGTTCATTTGAAGAAGAAAAAAAAC
chrIV:2447763-2447778
AAATGCTGAAAATTTAATTTTCTAAAAATG2447763TTCAGTTGACAACATTTTTATAACTCCTAATATTTTTGAGCTATGC
chrIV:5236403-5236416
AAACAAGATGAGCATGGAGGCAGAAAATCA5236403TTCATT-ACAACATTCCGGTTAGAATACAGTTCATTTTTTTCTTT
chrIV:5775852-5775867
TGATTCCGGACCTCCATCGTCCGGATTTTG5775852TTCAATTGACAACATTGAGCCAAGATCCACGAGGTGTCAGAATATT
chrIV:6605681-6605694
GGAACAGGCACATGGAAATTGAGAGCTTGA6605681TT-ATTGACAACATTGACAATGAAGAACATGGTAACCGTCTTGAA
chrIV:7251633-7251646
TGGACCTGAAAAATAAAAAAGTTAATTTCA7251633TTCATTGA-AACATTTTTCATGTTCAAATGAAAAAGAAAAAAAAC
chrIV:8260287-8260301
CACCGATTTGTGGTGCATAATGTACAAACA8260287TCCATTGACAACATTTCTTTAAAAAATAATTTTTTACTAAAACAT
chrIV:11273802-11273815
TTGTTCATTCTTCAATATTTCTTATAAATT11273802TTCATTGA-AACATTGAATTTTAGTGTCTTTGGGAGGCAAAAATA
chrIV:13713425-13713438
GGCTTGAAACAGGTATTTTAAATTATTTTG13713425TTCATTGACAA-ATTTTGATTTTAGAAATCAAAGTTTTATTTTTC
chrIV:13836316-13836331
TATTTGTAGAACTTCTTCGCTGGAATTGAT13836316TTCATTGACAATCATTGTTTGACGAGTATATGGAGTTGATATATAG
chrIV:15341886-15341899
CAAAAAAGTATATTTCTTTACAGCGATAAA15341886TTCATT-ACAACATTTAGAAAACTGTGCTCATACGTATTGAACAA
chrV:2321617-2321631
AATATTTTTCAGCCAAATTAATAGACAATT2321617TTCACTGACAACATTCGTTCAGTAATTTGAAAATATTTAGCCATT
chrV:3516035-3516049
AAGATTTGTCTTTTTTAGGTTTTACAATCA3516035TTCATTGACAACGTTTCTTTACATGCCAACACATGCCAACGTTTC
chrV:3655979-3655992
TGGACCTGAAAAATAAAGAAGTTAATTTCA3655979TTCATTGA-AACATTTTTCATGTTCATTTGAAGAATAAAAAACTT
chrV:8326362-8326375
GGACCTGAAAAAATAAAGAAGTTAATTTCA8326362TTCATTGA-AACATTTTTCATGTTCATTTGAATAAGAAAAAACTT
chrV:11269365-11269379
GGTTAACACGTTTGGTTCCTAGTGAATGAA11269365TTTATTGACAACATTATTCGTTAAAAATAATTTCAGCTACCTATT
chrV:12452031-12452044
AATGATGATGATCGACGTGCAAAACCTGAA12452031TTCATT-ACAACATTTGGAGGTGGTGCCGATCGAGACAGTGATGA
chrV:12571102-12571115
TTCACATTGTTATCCGATATCGTAAGATTA12571102TTCATTGAC-ACATTTCCTGCGTAAATGCATGTTGGTAAATTATA
chrV:14137519-14137532
TGGACCTGAAAAATAAAAAAGTTAATTTCA14137519TTCATTGA-AACATTTTTCATGTTCATTTGAAAAAGAAAAAAGAA
chrV:15652987-15653001
TTTTTTAAAATTGTATTTTGCCATGGGGGA15652987TTCATTGAGAACATTTCTGAAAATCAAACAACTAAAATTTCGATT
chrV:19416855-19416869
AATTAAAAAGATACACGAGTGAACGTCGTA19416855TTCATTGAAAACATTGATGCAGCTTATTAACAGGTCAATAATGTA
chrV:20787457-20787470
TGGACCTGAAAAATAAACAAGTTAATTTCA20787457TTCATTGA-AACATTTTTCATGTTCATTTGAAGAAGAAAAAAAAC
chrX:1198955-1198969
TGATTTCTTCAAAAAAAAATTACCCGAAAA1198955TTCATTGATAACATTATCATGGGCACTAAAGCTGGCCTGATAGAA
chrX:3761691-3761704
ACCGTAATGGGATAGGCTGGCACCACGTGT3761691TTCATTGA-AACATTACTCTGCATCAATAATAAACTCAAACGTAT
chrX:7270621-7270635
TCCGGCTGCAGCATCCAAAATGACTTATTC7270621ATCATTGACAACATTGTTGCCAAATTGGCCCGTAATAATTGAAAT
chrX:10736227-10736241
AGCTCGGGAAGTGATTTTTTACGAATTTCA10736227TTCATTTACAACATTTTTCAATGTTATGGATATAGGGTGCCCTAC
chrX:12357356-12357370
CAGATACATCAGCTACCAATATTTCCAAGG12357356TTCATTGACAACATCTGTGAAAAGTCGACTATAAATAGTGTCCCG
chrX:15110397-15110411
CGCAAAATTTTGATTTTGATTTCCATACAT15110397TTCATTGAAAACATTAAAAATAGCCAAGAGTGTTCCATCACGATA
chrX:16269577-16269591
CTTCTCAGCCTCTTCATGGTCCTTTCCTGT16269577TTCCTTGACAACATTTGTGGCAGTAGTGATCTCCATCTCATACAT
chrX:17520306-17520320
AGAAAAACAAAGCATTTAGGTGAACTAGCG17520306TACATTGACAACATTTTTTTGCTATTCGGCAGCTCAGTTTTTCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ce10/1/TTCATTGACAACATT
lang : en | db : ce10 | k : 1 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.121 | 0.111 | search_plus_done; http://172.18.8.76:28109/match?q=TTCATTGACAACATT&k=1&no_gap=0&offset=0&limit=50
0.170 | 0.050 | search_minus_done; http://172.18.8.76:28109/match?q=AATGTTGTCAATGAA&k=1&no_gap=0&offset=0&limit=0
0.170 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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