GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 19:14:28, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:3109035-3109052
CCTCATGCTCTGGCCTGCTCATGTTCCAAT3109035TGGGCAATCTCTTCATGAGGGATGTGGGTTCAGGACTGGGTTTGGGGA
chr1:11452188-11452205
GCTGGGCTCTAGCCTTGGTTTCCATGGCAA11452188TGGGCAATCTCCTTCTT-CATTCTGCTCCTCTCTGAACCAGCTGACAGC
chr1:13149655-13149670
TCACAGTTTCTTTATCCAGTCACCCACTGA13149655TGGGC-ATCT-TTCTTGCTTCCAAGTTTTGGCGATTATGAATAAAGCT
chr1:18120558-18120575
ACCATGAAAAGTCCCTCTCACATTCTGTTA18120558TGTGGCAATCTC-TCTTGCTGACGCCTCACAATCACCCTGTTTATGGGA
chr1:26819694-26819712
TCACTGTCTCCCACACTCCCTGCTTGTTCC26819694TGGACAATCTCTTCTCTGCACAGCAGCAAGACGCATATTTTATTTTTAT
chr1:39087134-39087151
TTTGCTATCCTGATATAATACAGAAACAGA39087134TGGGCCAATCT-TTCTTGCATTTTCCAGATTCAAGATAAATGCTTGGGA
chr1:44247521-44247539
CCTCCCATTTCATAGAGAAAATAAATCTAT44247521TGGGCAATCTACTTCTTACTCTCCCATCCCTATACCAAACCACTGCGGT
chr1:85284429-85284448
CTCCTGTTGAGATAAACGTATCATACATTT85284429TGGGCTAATCATCTTCTTGCTTTTTCTCATGGTTTTCCAATATACGGATG
chr1:96147117-96147132
GACTCAGTGAGATGTCTGAAGCATGGGAAT96147117TGGGCAA-C-CTTCTTGCCCTTCCCAGCAGCTGTGAGTGTTAGAATGC
chr1:96774137-96774153
TAAAAACAGTCTTTTCCTCTCACTATACCC96774137TGGGCAATCTCATC-TGCTTCATGACTTTGTACTTCATCCCTGTGTTT
chr1:118186564-118186581
GTCTAAGTTGATTGGTTTTTTTCCTTATTA118186564TGGGCTATATCTTCTTGCCTTTATACATGCCTGAAAATTTTTTATTCA
chr1:119657319-119657335
CACAAGAAAAGTAATTTTCATGGGTAGGAT119657319TTGGCAA-CTCTTCTTGCCATCCCATCCCTGTGTAAGAGACAAAATAG
chr1:120893397-120893413
GCTGGCTTCACCGTGGTCATATAGCAGAAG120893397T-GGCAAGCTCTTCTTGCTCTTGAGGAAAGCTCACACCTAGATTGTTG
chr1:149840406-149840422
GCTGGCTTCACCGTGGTCATATAGCAGAAG149840406T-GGCAAGCTCTTCTTGCTCTTGAGGAAAGCTCACACCTAGATTGTTG
chr1:152711713-152711729
CCCCGTGTCTTCTCTTTTCCCTCTTTCTCC152711713TGGGCAATCTCTTCTA-CTCCCTGGCAACAGTTAACATCACCATGATG
chr1:153345060-153345078
ATATTATATTTCTCTTAGACAGGATTGCCC153345060TGGGGAATCTCTTCTTAGCTGATCTCTTAGCTTCCATGCTTGCCTGTGC
chr1:166293392-166293407
ATGAGTTCATGCTGGTTGTTTAAAAGAGCC166293392T-GGCAATCT-TTCTTGCTCCCTCTTTTTCCATGTGACATGCCTGCCT
chr1:178535425-178535440
CAAACTCCTGACCTCAAGTGATCCGTCAGC178535425TGGGCAA-CTCTT-TTGCTGGTTTTGCCTGGGCTTACTCATACAGCTC
chr1:182648687-182648705
CTTCCTGCCTCTCTCACCTTGCATGCTACT182648687TGGGCAATCTCATCCTTGCCCATAGTCCTAACTACATTGGGTATATTGA
chr1:184026255-184026271
TTAGGTTACAAAAGACTGTGGCTTCTATCT184026255TGGGCACTCTC-TCTTGCTTACTATAAAGGAAGCCAGCTGCCACGTGA
chr1:198355527-198355543
GAAGCAAGGGGCATGAATAAATAATAATTA198355527TGGGC-ATCTCTTCTTCCTTTGTTTGAGCTCTTAGGGGCAAAGACAGC
chr1:202904622-202904640
TCTTACTCTGTTGACCAGGCTGGAGTGCAG202904622TGGTGCAATCTCTGCTTGCTGCAACCTCCACCTCCCAGGTTCAAGCAAT
chr1:222008028-222008045
TTCATTCAAGTCATTGCAAATTAGTTTATT222008028TGGGTAATCTCTTCTGGCACATCATTTAGCAATAGCAGAGGATTTAAA
chr1:223401390-223401405
AATAATGCATCTGCCTCTTGAGAACAGAGG223401390TGGGC-ATCTC-TCTTGCCTGGAGAAGTTGCTCCGAAATGGACCAAGG
chr1_gl000192_random:197641-197657
AAAACAGATTTTTTGACCCCACTTTCATTT197641TGGGGAATCTC-TCTTGCTGAAAAGTAGAAAGGACATTTGTGTGGAGA
chr2:9119777-9119794
TTATTCCAAATTTAGGGGGTACTGCCAATA9119777TGTGTAATCTCTTCTTGCTATTGCTTGATGCCATTATAATATTAAGCA
chr2:22695797-22695813
TGTGGATCAGTAAGTTGAGCTGGGCTCAGC22695797TGGGCAGTC-CTTCTTGCCTAGGCTTATTTTATTTATACAGTTGCATT
chr2:39188129-39188146
CTGATTAACACACACGCATTTAGGGAGTTA39188129TGGGTAATCTCTTCCTGCTTATGTGAAGAGTTGCACTTTTTTCAGAGC
chr2:39247333-39247349
GCCTTGGGATTTGTCTACAAAGTGAAGGCT39247333TGGGC-ATCTCTTCTAGCATTAGAGATCTATAGCTCCATTTTGTACAT
chr2:42986760-42986778
TAAAAGATGGCTTGATTCTGTCCTTTTTAA42986760TGGGCAATCTCTTACTTGGGTGAAGATTGCCTTGACTTCTTTTCTTCTG
chr2:46748380-46748397
CTGGGAAGGATCTTTAGAGGAAGTGTGAGC46748380TGGGAAATCTCTTCTTGGGCCCTTGCCCACATGAGCTTGTGAGTATCT
chr2:49425473-49425491
TCTCACTCTGTTGCCCAGGCTGGAGTGCAG49425473TGGTGCAATCTCTGCTTGCTGCAACCTTTGCCTCCTGGGTTTAAGCGAT
chr2:52214811-52214827
GCATAGTGAGACATGGAGGTCCTGTGGAGC52214811TGTGCAATCT-TTCTTGCTTCTGCACTATGTCACTCTAGATGTTTCTG
chr2:67318538-67318556
ACATTGGGGAAACTCTCCAGGACATTGTTC67318538TGGGCAGATTTCTTCTTGCCCAGTTAAAATAGCTTGCATCCAAAAGTCA
chr2:95745895-95745911
CAGCATCCAGTAAACAGGGACTGCTATATT95745895TGGG-AAGCTCTTCTTGCCCCCTGGTGGTTGTAAAGATGTTTAGATAA
chr2:97423822-97423839
ATGCTCAGGGGTCCAGGATCAGGACTCCTC97423822TGGGCAATTTCTACTTGCAAATAGAAGCAACTAGGTAAGTAAGGACTT
chr2:109988606-109988621
CTGCAAAGTCCTCCTTGGACTCAGGGTTAT109988606TGGGCAA-CTCTTC-TGCCTGAGAGGCACCACAGCAAAGGTGTTTTGA
chr2:126157065-126157083
TTCTCAATAAAGTAAAAACTGCAAACGTTG126157065TGTGGCAATGTCTTCTTGCCCTGTGTGTTTCCAGATCTGAAAGAACTGA
chr2:138013242-138013258
TTCAGACTTTCACTTACTGTTCCCTCTTTC138013242TGGG-AATCTCTTCTAGCCTTTTGCCTGGGTGCCTTTCTAAAACTTTT
chr2:146644709-146644725
TCTGATTTAGATAATGTACTTGGGATTAGG146644709T-GGCAATCTCTTCTTGCTTTGGTGGCCAAAGAGCAGTCCAAGTGGAT
chr2:150138558-150138575
ATATTTTCTCTGTGTACAAAAGCTAACACT150138558TGGGCAATATTTTCTTGCTTGACTTTTTTTTTCTTTGCTGAAACAATA
chr2:154628554-154628570
TGGCTGCAAATCCCAGATTAAATCTTGGCT154628554TGAGCAA-CTCTTCTTGCTGCAGTCTTGTGACTGGAGAGAGCTGATTC
chr2:157964255-157964273
GCTTACTGCCACTTGCTACTCCCCACTCCC157964255TGGGCAAACTCTTCTGTGCAGCAGAGGCAGCTATGCTCCTTCCTGGAAC
chr2:199549978-199549993
GCCAAACTGCCTCTCTAGATTCGTCCTCTC199549978TGGGC-ATCTCTTCTT-CAGGTATCTCTGAAAAAAAGGCAGCATCCCC
chr2:204842425-204842441
GCAGCTTTCAGTTTTGATGCATGAAGAGGT204842425TGGGCAAT-TCCTCTTGCAAAAAGTAAGCAAAGGTAGACACAATATTG
chr2:205505411-205505428
ATTAACTTGCCTTCAGTAACCCAGATGGAG205505411TGTGCCATCTCTTCTTGCCCAGGTCCCTGACTGATAGACCAGCTCTCT
chr2:210207301-210207318
ACATAAAGGGAAATCTACACAGCATAGGTG210207301TGGGCAATGACTTCTTGCATATAACCTCAAAGGCGCAGGTAACAAAAG
chr2:214709753-214709770
ATGGTATATTTGGATGAAACATTATTCAAA214709753TGGGCAATCTCTTCTGGCTCCATTGTCTTGTGACTGTGATTCTAAATG
chr2:221600027-221600043
AAAAAAATTAGTTGTTGAATAAATAAGACA221600027T-GGCAATCTCTTCTAGCTAATTGAAATGTCCAATATTGGTTTGAATG
chr2:222268423-222268440
TAGTACACTGTAAATATTTTTGCAAAGATT222268423TGGGCAATCTTTTCTTTCTATAAATACTTGTCTGCACAACAAAGGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/2/TGGGCAATCTCTTCTTGC
lang : en | db : hg19 | k : 2 | strand : | nogap : | query_string : TGGGCAATCTCTTCTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.347 | 2.338 | search_plus_done; http://172.18.8.78:28018/match?q=TGGGCAATCTCTTCTTGC&k=2&no_gap=0&offset=0&limit=50
3.735 | 1.388 | search_minus_done; http://172.18.8.78:28018/match?q=GCAAGAAGAGATTGCCCA&k=2&no_gap=0&offset=0&limit=0
3.735 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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