GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-20 18:00:36, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:21238674-21238689
CCTGTGGTCCAAGCTACTCAGGAGGCTGAG21238674GCAAG-A-AGATTGCCCAAGCCTGGGACATTGAGGCTGCAGTGAGCTG
chr1:29766476-29766492
GTAAACAAAGGCAGATGAAGAAAATAGCCC29766476GCAAGAGGA-ATTGCCCAAAGAAACAGGGGAAAACAATTGTTCTTCAG
chr1:41973876-41973893
GCCCCCGGTCTGCTGCTTTGTAGGTCTGGG41973876GCAGGAAGAGCTTGCCCAGGCAGATTTCTAACCTGGGCTGAAGCAATG
chr1:43284941-43284957
AGAGCTAGATTACGCTTCAAGTGGCAATAG43284941GCAAGAAGA-ATTGTCCAGTGAGCAATTAGAAGATTTCAGAAAAGAAC
chr1:50283016-50283033
TCTAGATCATGCAGACCCAGGCATATACAT50283016GGAAGAAGAGATTGCCTAATAAGTTTCCAGCTTCCTTTATGCACTATG
chr1:51316563-51316579
CTGATTTATGTCAGCTGATTTTTGAAACTA51316563GCAAGAAGA-ATTGCCAAGGCATCATATTTACAGGTGTGCTAAACCAC
chr1:61823483-61823499
ACATACGAAAACTTCTGTCCCCTGAAACGT61823483G-AAGAAGAGATTTCCCAACACGCACTCCCAGTAGATATGAAATCTAC
chr1:66426075-66426092
TATATTAACTTTTGAGAAAGAGAAAGTTAG66426075GCAAGAAGAGATTGCTGAAATAGATTGTCTGTGATTGCTGAGGTTGAA
chr1:78501262-78501278
ACATAAACCATCTACTTATGTTTAGTCTCT78501262GCAAGAA-AGAATGCCCAACAATTTTTCTCTTCATGGGGTTCCCATTC
chr1:91000613-91000629
AAATGTTTTCATATCAAGCCTTTTATCTGG91000613GGAAGAAGAGA-TGCCCAACCTCTCAACTCAGTAACAGCCAGCACTTT
chr1:94138876-94138893
GTCCACATATTTCCACCACCCTATAAAAGG94138876GCAAGAACAGATTGCTCAATAATTTGGCTGCTAGAATGTTTTCAATGC
chr1:149412101-149412117
CAACAATCTAGGTGTGAGCTTTCCTCAAGA149412101GCAAGAAGAGCTTG-CCACTTCTGCTATATGACCACGGTGAAGCCAGC
chr1:149796520-149796536
CAACAATCTAGGTGTGAGCTTTCCTCAAGA149796520GCAAGAAGAGCTTG-CCACTTCTGCTATATGACCACGGTGAAGCCAGC
chr1:150229651-150229670
GGCCTCACCGTGGGAAGGGGGTGGTGGCAG150229651GCACAGAAGAGATTGCTCCAGATGAGTTCTCCTTGCCTCACTTCTCTTCC
chr1:164058185-164058201
TCAGGAGTGATCTAAATATATAAGTGTTAA164058185GCAAGAAGAGCTT-CCCAAAAAGTGCAAGTTGTATAGTATGATTTGAG
chr1:166734215-166734231
AGAGTATAAATGTTATGTAAAGTTGTAAAA166734215GC-AGATGAGATTGCCCAAGGAGTGGGTGTAGTTAGAAGAGACCAAGG
chr1:174778693-174778711
TTAGAAAATTAGATAACTATGCTACTGTCT174778693GCAGAGAAGAGATCGCCCATCACCATTTTGGGGCATCTGTTTCCAGGTA
chr1:181232122-181232140
CAGCATGAAAAAGAGAGAAAGAAAAGGTGA181232122GCAAGAGAGAGTTTGCCCAGGAGACAGACAGGGCAGCCTCTGGATGGTT
chr1:194039100-194039115
AGCAGATCTGGAGTAACAAAGTAGCTTAAA194039100GCAAG-AGAGA-TGCCCAGCATCTGCAAGAGACTCTTTCCTGAACCAG
chr1:205548434-205548450
GGACACAGGGCAGCCAGCGCCAATTCCTGG205548434GCAAGAAGAAA-TGCCCAGCTCTGAGACTTCTGGGCTCAGGTTCCATC
chr1:210034333-210034351
CCCATCACCACACTCTGGCTACACCTTTCT210034333GCAGAGAAGAGATTGACCATAATCCCTTTAGAATTGTGGTTTCTTGTCT
chr1:210052502-210052520
GAATTGTCAGGAAAATGGAGATAGCTTCAG210052502GCTAAGAAGGGATTGCCCAGGGAACTGCCTGGTGTTTCTGCAGAATCAC
chr1:221505859-221505874
AGCTTCAGTTTGGGAAACTTAAAAAGTTCT221505859G-AAGAAG-GATTGCCCAACAATGTGAATGTACTTAACACTACTGGAC
chr1:244842082-244842100
TATTCTATATTTTGAAAAAGAAGCTGTGCT244842082GCAAGAAGAGAATAGCCCACTTTAAAATAGAGCCGCCTGCATCCGGAAC
chr2:85952-85968
GAGCTTGATGTTATGACTTGAAGCCTCGAA85952GCAAGAA-AGATTGCTCAGTGAGTGGGCAGAGAAAGAATGTCACAGAG
chr2:9294740-9294757
GTCACATACAGGAAAATTGAGGCCTGCAAC9294740G-AAGAAGAGACTTGCCCAAGGTCACAAAGATAATTAGCCTCCAAGGTA
chr2:20220824-20220841
TCTGTGTCTCACATTCCAGGTCAAACTCAT20220824GCAAGAAGTAGATT-CCCATGGCCTTGAGCAGCTCTGCTGCTGTGGCTT
chr2:22379124-22379139
AATATTTGTCCTGTGCCTATGAGGTTCTTG22379124GCAAG-AGAGA-TGCCCAGTCCTCATGGAGTATAGTGGGGTCTATAAA
chr2:31808538-31808555
AACCAATAATGCAACTGGTCTGTATTACAT31808538GCAAGAAGAAAGTGCCCAATTATAAATATACAGCTTGGTTGATTTGCA
chr2:64509962-64509977
GTCCTGGCTCCCAAGTGAGACATGAAAGCC64509962GCAAG--GAGATTGCCCACCATTTGTGAAGGGGCACAGACACCAGGAA
chr2:72974562-72974579
TGTTTGAGGATGCAGTAACCATTCTGAAAA72974562GGAAGAAGATATTGCCCAAAAAATCTTAGAATGGCAAAGGGGAAAATG
chr2:82331293-82331308
CAGATTTACAATGTATACTGTTTAGTAAAT82331293G-AAGAAGAGATT-CCCAGACTTCTGAAACCAACATGCCTTCCTGTTT
chr2:112899604-112899620
TGTCTTAGGTGCTTTGTGAGGGGAAAGGGA112899604ACAA-AAGAGATTGCCCATAGATGGTCATTTAAAAATTCTAGTGAGAC
chr2:119112061-119112076
TCTAAAATAGGCCAAGTAGTGCAACCCAAG119112061GCAAGAAGA-ATTG-CCACATCTCTCTAAAGGAAATTCAGTGCAACAA
chr2:124003265-124003281
GACATACAGAAAGGAGCAACATCAGCATCA124003265GCAAAAAGAGATT-CCCACACAAAAACCTCAAACAAAGATCATCAGCC
chr2:130683470-130683488
GTGAGGTCAGTCCTCAAAGCAAACTCAAGA130683470GCAAGAAGAGGATGGCCCAGGTGGGGGTCAGTGTGCGACTGTCAGTTAT
chr2:144945752-144945768
TAGGAAACTAATACAGATGGTCAAATCAGT144945752GCAAGAAGAGATAG-CCAGGCAAATAAAAAAATTATTAGAAGAACTCC
chr2:169537152-169537170
GTTGCCACATGATATTAAGAGGTGGGACCT169537152GCAAGAAGAGATTAGGCCATGAGAGCTCCTTCCTCCTTAATGGGATTTA
chr2:184890575-184890590
GCCAAGTGACCTAAGTTAACACTACATGGA184890575GCAA-AAGAG-TTGCCCAGTTTAGCACTGCCCTATTTCTTGACCCACA
chr2:199068660-199068676
TGGTTATAAATAATATGTAAAGTCATGAAT199068660G-AAGAAGAGATTGCCAACATAAAATATGCAGAATGAGAAGGGGGTTT
chr2:202487811-202487826
CCCTTTTCGGCAGCTCCAGCCTTACAAACA202487811GCAA-AAGAGATT-CCCAGTATAATGTTCACTCCAAATTTAGACCTAT
chr2:218778675-218778692
ACAAGATTGCCTGGTTCTCTCTTCCCGCCA218778675GCAAG-AGAGACTTGCCCAAAACATTTACACTAGATTGCCTGGCCCTCT
chr2:221796315-221796330
AAGTAGGGATGGGGTGGTTGGGTAATACTG221796315GCAAGAAGAGA-TG-CCACCCCATATGTGACCCTGAATTTGAGGCTAA
chr2:221838624-221838639
CCTCTATATACAGGATGATGTGAGAATACT221838624GCAAGAAGAGA-TG-CCATTTCAACTGAGACTTGAGGAATATAACTCT
chr2:230839494-230839509
ATAATGTTTAATGGAAAGGAAACTTGCAGT230839494GC-AG-AGAGATTGCCCAGGCCTGTGTTGCTGTAAAATGCATGCCATT
chr2:236276958-236276974
CCCAGCAAAAGTACTAGGGAAAAGGAGGCA236276958GC-AGAAGAGATTGCACAAGGACATAACGTTTTCGGTCTCAGTGTGAC
chr3:12111727-12111743
CTGCCGCCCTGCTCCTCCGCCTGTCACAAT12111727GGAAGAAGAGATTG-CCATGCTGGTCATTGACAGTGTCTCCGGCATGT
chr3:23233265-23233280
AAACCATCAACTTTTGGAGTGGTTTGTTAT23233265GC-AGAAGAGATT-CCCACAACAATATCCAAAGGCAAAAAGGTGTAAA
chr3:31935759-31935777
TCTGCAAATAAGTAGAAATTGAGGCCACAG31935759GCATAGATGAGATTGCCCAGAAAGAGGAACAAGGAGGACAAGGGGAGGC
chr3:48500906-48500921
TGCAGGGGCCTGCATGGCTCTGAGTAATAT48500906GC-AGAAGA-ATTGCCCAGGCCTCTGAGAACCGGTGCCCCGGGCAGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/2/GCAAGAAGAGATTGCCCA
lang : en | db : hg19 | k : 2 | strand : | nogap : | query_string : GCAAGAAGAGATTGCCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.500 | 1.490 | search_plus_done; http://172.18.8.78:28018/match?q=GCAAGAAGAGATTGCCCA&k=2&no_gap=0&offset=0&limit=50
3.811 | 2.311 | search_minus_done; http://172.18.8.78:28018/match?q=TGGGCAATCTCTTCTTGC&k=2&no_gap=0&offset=0&limit=0
3.811 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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