GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-20 05:36:34, GGGenome : Actinidia chinensis genome

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chr13
position: 17114939-17114953
TTAAAGAAAGCCCACCTGGGTAAACCTGAA17114939AATGTTGTCAATGAAAAGCAGCACATCCTGCCCTTCAGCATCTCG
Chr23
position: 13443795-13443809
ACAGATCAAAAAAACTGACGCCAGGGGCAA13443795AATGTTGTCAATGAAAGTATGGGAGTAGTTTGATTGGGTAAGCCC
Chr24
position: 15777400-15777414
AGGGATCAACATAACCTGAGGCCTGAACAA15777400AATGTTGTCAATGAATAATTTCTATATTCAGATGTTTTGGTTATG
Chr01
position: 15707602-15707616
AATACTATTTAACAGGAAAAACTTATGTAT15707602TTCATTGACAACATTAAATAAGGATTACAGTCAAGTAACGTACCA
Chr29
position: 6249531-6249545
CGAGATGCTGAAGGGCAGGATGTGCTGCTC6249531TTCATTGACAACATTTTCAGGTTTACCCAGGTGGGATTGCTTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/A_chinensis_Hongyang/AATGTTGTCAATGAA
lang : en | db : A_chinensis_Hongyang | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.72:28281/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.72:28281/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=47
0.088 | 0.001 | cgi_end;

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