GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-05 06:41:59, GGGenome : Acyrthosiphon pisum genome, Acyr_2.0 (Jun, 2010)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GL351037 dna:supercontig supercontig:GCA_000142985.2:GL351037:1:141165:1
position: 105930-105944
GTCATCGCATTTTAAAACGCATTGTTTTAA105930AATGTTGTCAATGAAGTGCTAATATTTTAAACATGTGTGTTTCTA
GL350052 dna:supercontig supercontig:GCA_000142985.2:GL350052:1:193683:1
position: 111903-111917
GTACTTAGTTAAATAATAAATATACATACT111903AATGTTGTCAATGAACAATAGTATGTAGGTACATTACATTACTGC
GL349862 dna:supercontig supercontig:GCA_000142985.2:GL349862:1:741136:1
position: 411418-411432
TATACATATATTATTATATATTCCATAATA411418AATGTTGTCAATGAACCTTATGCTCACACATAAGATTATAAACAG
GL349904 dna:supercontig supercontig:GCA_000142985.2:GL349904:1:980720:1
position: 298294-298308
TGATAAAGAACTAAGTACATATATTTTTTA298294AATGTTGTCAATGAATAGAAGATATTAGTTCTACTTCTATGTCCA
GL349956 dna:supercontig supercontig:GCA_000142985.2:GL349956:1:391721:1
position: 90551-90565
TGAGAAAATTTAAGATTTTAATGGACACTG90551TTCATTGACAACATTGTCTTAGCACTCAACTACAAAAAATATTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/Acyr_2.0/AATGTTGTCAATGAA
lang : en | db : Acyr_2.0 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.76:28131/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.006 | search_minus_done; http://172.18.8.76:28131/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=46
0.087 | 0.001 | cgi_end;

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