GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-27 12:17:46, GGGenome : Capsicum annuum var. glabriusculum (Chiltepin) genome, release 2.0

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chr00 2012-12-18 BGI
position: 118828483-118828497
AGACCTTACTTTAATTCCATTGTGATTTTA118828483TTCATTGACAACATTCTTGTGTTTTTGAGAAGTAGAGATAAGAAC
Chr00 2012-12-18 BGI
position: 221786094-221786108
AATATGTTCAAAACTAAGGATTAAATTATA221786094TTCATTGACAACATTAAATAAATTGAAGCCTTCAAAAATTACATG
Chr00 2012-12-18 BGI
position: 236990969-236990983
AGGCCTTATTGGTATTATTTTATGATTGTG236990969TTCATTGACAACATTCTTGTGCATTCGAGGAGTAGAGTGGAGTTT
Chr00 2012-12-18 BGI
position: 281879929-281879943
CGACTAGGCCCTGGTTTGGGTTGTGTCAAA281879929TTCATTGACAACATTAATGAGAGCATGTATTCTTTTGATAAGTTC
Chr00 2012-12-18 BGI
position: 690403118-690403132
AGATCAGTAGCTTTATTTGGGTATAGTATT690403118TTCATTGACAACATTCAATTTGACCCTCAAAATACCAAAGTAGCG
Chr00 2012-12-18 BGI
position: 811955752-811955766
ACAACCTATAAACATACTTGGGGCCTTTTT811955752TTCATTGACAACATTGTCCCAAAATTATTTTTTTCTCTCTTAAGT
Chr00 2012-12-18 BGI
position: 839751016-839751030
TGGGAGATCATCCAGAAAGACATCAGAAAA839751016TTCATTGACAACATTAACAAACTAGAGAGTTAGAGTCTCAAACTT
Chr00 2012-12-18 BGI
position: 931405960-931405974
AGATCAGTAGCTTTATTTGGCTATAGTATT931405960TTCATTGACAACATTCAATTTGACCCTCAAAATACCAAAGTAGCG
Chr00 2012-12-18 BGI
position: 1042164835-1042164849
CGACTAGGCCCTGGTTTGGGTTGTGTCAAA1042164835TTCATTGACAACATTAATGAGAGCATGTATTCTTTTGATAAGTTC
Chr01 2012-12-18 BGI
position: 27770695-27770709
AAGCAGTACTTCAACATGTTCATCATAGAT27770695TTCATTGACAACATTCTTGTCTACTCCTGCAGTGAACATGATCCT
Chr03 2012-12-18 BGI
position: 36253951-36253965
AATGTCTTGTCATCCTTATTTACTCGTATT36253951TTCATTGACAACATTGAGATTTTATAGTTGGAATGTGGTCGGAAA
Chr03 2012-12-18 BGI
position: 81189858-81189872
TGTCATCAAATCTAAACAGAACCTACTTCA81189858TTCATTGACAACATTTCTAATAAGCCGTCACAGTTGTGATAGCTC
Chr03 2012-12-18 BGI
position: 146187999-146188013
ATTAATTCAAGATCCTTATCATGTTGTAAT146187999TTCATTGACAACATTATAAGTAAAAATATTTTCAACGATTATATC
Chr03 2012-12-18 BGI
position: 182474687-182474701
AGGCCTTATTTGGATTACTTTGTGACTGTG182474687TTCATTGACAACATTTTTGTTTGTTTAGCATATGCAATATTTCAA
Chr04 2012-12-18 BGI
position: 2176606-2176620
TACTCTATTGTTAAAAATAATGAATTACTA2176606TTCATTGACAACATTTAACCAACCCGGCAACCAGATACTTCGACC
Chr04 2012-12-18 BGI
position: 71145312-71145326
TTTAATTGATATTGATAACGACTTATTGAT71145312TTCATTGACAACATTACTCATTCATCACTCCTGATTATCTATATA
Chr04 2012-12-18 BGI
position: 113258405-113258419
AAGCCTTATTTGGACTCCTTCATGATTTTT113258405TTCATTGACAACATTCCTGTGTACTCAAAGAGTAGGGACGAGAGT
Chr04 2012-12-18 BGI
position: 175959205-175959219
AGGTTTTATTTTGACTCCTTCATGTTAGTT175959205TTCATTGACAACATTCCAGTATATTCGAGGAGTAGGAAAAAGCAC
Chr05 2012-12-18 BGI
position: 23813027-23813041
CGCAAGGTTTTGAATCTATTTGTCATAGTT23813027TTCATTGACAACATTTTTGTTCACTCTAAGAGCAAGGAGGATCAT
Chr05 2012-12-18 BGI
position: 141693539-141693553
CATCAGTTTTTAGATTTGTTTTTCATCATT141693539TTCATTGACAACATTTTGATTTCTTCTAATAATAAGGAGGATCAT
Chr06 2012-12-18 BGI
position: 11494773-11494787
AGACAATTTAGAAACAAGAGCTAGAGGCAT11494773TTCATTGACAACATTTTCTTTCCAAAATTTGAGCTGATTAGAACC
Chr06 2012-12-18 BGI
position: 106553786-106553800
CAAAGTGTTACTGATATTTAAAGCGGAAAA106553786TTCATTGACAACATTAATTTTTGAATAAAGTTACCTTGCTCATGT
Chr07 2012-12-18 BGI
position: 139724455-139724469
TCGTCTATATGTAGCCCAACATGAAAGATA139724455TTCATTGACAACATTGCTCTTCACTTAAGAATCTGAAAAAATCAC
Chr07 2012-12-18 BGI
position: 145620625-145620639
AGGTAATATTTGTATCGCTTCATTATCATG145620625TTCATTGACAACATTCTTGTGTATTCAAGATTAGGGTGGAACATG
Chr10 2012-12-18 BGI
position: 24157251-24157265
TTAAGGTATTAAGGTCATTCTTTGCAGCTT24157251TTCATTGACAACATTTTTATTTGACAGAGTTACACTTTCAAGTGT
Chr00 2012-12-18 BGI
position: 120187058-120187072
ATGCTCCTCCCTACTCCTCGAGTACACAAG120187058AATGTTGTCAATGAACACAACCATGGAAGAGTCCAAAAAAGGTCT
Chr00 2012-12-18 BGI
position: 160032684-160032698
ATACTCCTTCCCACTCTATGTATAAACAAG160032684AATGTTGTCAATGAACACTATCAAGAAGGAGTCCAAATACAGCAT
Chr00 2012-12-18 BGI
position: 453708763-453708777
AGTGATTTTTAAGCCTCTTAAGTAAGGGGC453708763AATGTTGTCAATGAATGTATTTCGTTTTGGGATACCTATGGATGA
Chr00 2012-12-18 BGI
position: 561838030-561838044
ATGATCATTTTCATTACGGGAATAGATAAG561838030AATGTTGTCAATGAAGAATATGATGAACATGTCCAAGTACTTCTT
Chr01 2012-12-18 BGI
position: 257929901-257929915
ATGATCCTCTCTACTCCTCGAATATAATAG257929901AATGTTGTCAATGAACATAATTATAAAGGAATAAAACTAAGGCCT
Chr03 2012-12-18 BGI
position: 110345907-110345921
AGAACTTGTAGTTTAGGAAAGGCCTGAAAT110345907AATGTTGTCAATGAAAATGCATATTTGTGTATGAATATTAAGGTT
Chr03 2012-12-18 BGI
position: 219525130-219525144
ATAATCCACCTCGCTCTTAGAATACACCAA219525130AATGTTGTCAATGAACATAATCACAAATAAATCAAGATAAAGCTA
Chr04 2012-12-18 BGI
position: 109988888-109988902
ATTATTATAAGGTCTGAGCGCTTCCTAAAT109988888AATGTTGTCAATGAATGGCTTGAACTACTTTGCCTATGCATTCAG
Chr04 2012-12-18 BGI
position: 165475034-165475048
GATGACATGTCGATCTTTAACTCTAATGTG165475034AATGTTGTCAATGAAATGGAGAAGCAAATGTAATTTTAGAGATTA
Chr05 2012-12-18 BGI
position: 5680468-5680482
ATGATCCTCCTCGCTCTTAGAATAAATCAA5680468AATGTTGTCAATGAAAACTATGACAAACAGATCTAGAAACTGATG
Chr05 2012-12-18 BGI
position: 43568635-43568649
AAAATCCTCACTACTTCTCAAATATAAAAG43568635AATGTTGTCAATGAACACAATCACAAAGGAGTCTAGATATGGTAT
Chr05 2012-12-18 BGI
position: 86894502-86894516
ATGATCATTTTCACTATGGGAGTAGAAAAT86894502AATGTTGTCAATGAATACTATGATGAACATGTCTACGTACTTCTT
Chr05 2012-12-18 BGI
position: 101722671-101722685
ATGATCCTCACTACTCTTATAATTCATAAG101722671AATGTTGTCAATGAACACAATCACAAAAGAGGCTAAACAAGTCCT
Chr06 2012-12-18 BGI
position: 15507425-15507439
ATAAATAGTGGAAAAGAGCAGGCTCTGATC15507425AATGTTGTCAATGAATTGCTTTACAGCTAAGTTCTCTCATATCAA
Chr06 2012-12-18 BGI
position: 115142337-115142351
ATACTCCTGCATACTCCTCTAATACATAAG115142337AATGTTGTCAATGAATACATTTATAATGGAGTCCAAATAGGGTTT
Chr06 2012-12-18 BGI
position: 187931129-187931143
ATGATCCTCCCCAGTCTTAGAATAAATCAA187931129AATGTTGTCAATGAAAACTGTGACAAACAAATCTAGAAACTGATA
Chr06 2012-12-18 BGI
position: 189905000-189905014
CTAAAGGTATTAGGGTGTCTGTGTAATGCT189905000AATGTTGTCAATGAATCAGACAAGCTAATGCCTAGATCTTTGAAG
Chr07 2012-12-18 BGI
position: 167076303-167076317
TACATGGGCCATCACTAATGATCTTAAAAC167076303AATGTTGTCAATGAAATTCTATACTTTGTATAACTTTTGAGCTAG
Chr10 2012-12-18 BGI
position: 138810184-138810198
ATGATTTTTTCAGTTTTTTAAGAGAGGGAC138810184AATGTTGTCAATGAATATATTTCGTGTTGGGATACCTATGGATGA
Chr11 2012-12-18 BGI
position: 83990600-83990614
ATGATCTACCTCACTCTTAGAGTATACCAA83990600AATGTTGTCAATGAACATAATGACAGACAAATGAAAAAATGATGC
Chr11 2012-12-18 BGI
position: 180345282-180345296
GAGCGCTCTATTCTCTGGTGCTCTAATAAT180345282AATGTTGTCAATGAAGTAGTATCAGGGGTCTTATTCGTTGTAGGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/Chiltepin_v2.0/TTCATTGACAACATT
lang : en | db : Chiltepin_v2.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.72:28209/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.100 | 0.020 | search_minus_done; http://172.18.8.72:28209/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=25
0.114 | 0.013 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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