GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-27 10:09:09, GGGenome : Mouse genome, JF1v2

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2
position: 131323954-131323968
AGACAAATTAAGACTGTATTGTATCATGGT131323954TTCATTGACAACATTTAAAATTGTTACATATTTCAAAATTTTTTA
chr6
position: 141389982-141389996
AAAGTACTATCAGTTTCCTAAATATATCCA141389982TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA
chr6
position: 146144134-146144148
TGAACACATTCTCCCTGTTTGTGTCATCAC146144134TTCATTGACAACATTTAACTGGGCCTTCTGTGTGGATACCATGAT
chr10
position: 46788298-46788312
TATTTCTTTCTGTTTGTTTATATGATGGAC46788298TTCATTGACAACATTTCATATATGTAACCATCCTGTATCTCTGTA
chr14
position: 109654332-109654346
TGCTGCTGGAATCTCTCCCTGGAGGGTGTG109654332TTCATTGACAACATTGCCCAMTGAGAGTGACAACCTCAGCAGCCA
chr1
position: 32446145-32446159
TTTTTAAAGACAGCAGGAAATAGCAAATAA32446145AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC
chr2
position: 47195230-47195244
ATATCTATTTATTCATTGATGTAGCTTTCA47195230AATGTTGTCAATGAACACTGTTACTTCGTTGAGCACATGAAAAGT
chr3
position: 39223893-39223907
GTTGCCCCAGATTCAAGCTGCATGTTGACC39223893AATGTTGTCAATGAACTTCAACTACAAGTTCTGAGGCAGAATCTA
chr3
position: 42586816-42586830
TTAAACATCAGAGAAATGAAAAATAAGTAA42586816AATGTTGTCAATGAATAAACATCCCTGTAAGTTAAGGTTTGCAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/JF1v2/TTCATTGACAACATT
lang : en | db : JF1v2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.082 | 0.074 | search_plus_done; http://172.18.8.72:28266/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.006 | search_minus_done; http://172.18.8.72:28266/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.091 | 0.003 | cgi_end;

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