GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-20 01:49:33, GGGenome : Melitaea cinxia genome, MelCinx1.0 (Jul, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

scaffold4438 dna:scaffold scaffold:MelCinx1.0:scaffold4438:1:10243:1
position: 283-297
ATTCTAAAAAGTACTAAACGAATTAAATAA283TTCATTGACAACATTACTAAGAAGACGGCTTTAGTATATGGTGCG
scaffold4363 dna:scaffold scaffold:MelCinx1.0:scaffold4363:1:42275:1
position: 39222-39236
TTTCTGTTTAGTGAAGTTGCATTGAATGTA39222TTCATTGACAACATTGAAAATAGCTTTTATTAAAATACTAACTGT
scaffold5697 dna:scaffold scaffold:MelCinx1.0:scaffold5697:1:43761:1
position: 15691-15705
CGTGACCAGGAGGGACAAGATGTACTGCTC15691TTCATTGACAACATTTTCCGTTTTACTCAGGCTGGTTCTGAGGTA
scaffold916 dna:scaffold scaffold:MelCinx1.0:scaffold916:1:135557:1
position: 16597-16611
AGTTAGTAAGTAATACAGCAACAAGTTGGA16597AATGTTGTCAATGAAATTGAAACTGTTGCATTCAGTGTAGGCTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/MelCinx1.0/TTCATTGACAACATT
lang : en | db : MelCinx1.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.76:28151/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.005 | search_minus_done; http://172.18.8.76:28151/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.087 | 0.001 | cgi_end;

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