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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-20 17:48:23, GGGenome : Oryza barthii genome, Obart_v1.0 (Apr, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

7 dna:chromosome chromosome:ABRL00000000:7:1:24128185:1
position: 10376104-10376118
CGTGTGCCTCCTGGATGCACCAATCGGCTG10376104TTCATTGACAACATTTTGTTGAAGGACCTTGGCAACATCTTTTTG
7 dna:chromosome chromosome:ABRL00000000:7:1:24128185:1
position: 19256381-19256395
AGATCTATCTAATTTAGGTGTAGTGCTCTC19256381TTCATTGACAACATTTTTCACTTCCTGCGTTAGGTTTCCATTATC
9 dna:chromosome chromosome:ABRL00000000:9:1:19219615:1
position: 12836002-12836016
CTTTCAAATGATGGTCAAACTAATTATAAA12836002TTCATTGACAACATTAACTAAACGAGTGAAGAGTGAAGAGAAGAT
10 dna:chromosome chromosome:ABRL00000000:10:1:19274048:1
position: 1943587-1943601
ATAGATATATTCACAATATTGGTTCACAGG1943587TTCATTGACAACATTGAGTCACATACTCATTCACAATATTGATTC
2 dna:chromosome chromosome:ABRL00000000:2:1:31686972:1
position: 27300340-27300354
GAGCAAGCCATGAATCGGTACAAACAAGAG27300340AATGTTGTCAATGAACAGGTCTTATCCACACGTCGGACATCAGGA
5 dna:chromosome chromosome:ABRL00000000:5:1:24206129:1
position: 6755378-6755392
TATGATTAAGCACCCCTACCTACTTTGCAA6755378AATGTTGTCAATGAACTGTTTGTTCGCTACATAAATGTTCAATGA
5 dna:chromosome chromosome:ABRL00000000:5:1:24206129:1
position: 22061368-22061382
TCTTGCATAAATTACCTGAGTGAAACGGAA22061368AATGTTGTCAATGAACAAAAGCACATCTTGTCCTTCGGCATCACG
11 dna:chromosome chromosome:ABRL00000000:11:1:23014695:1
position: 4629461-4629475
GCTAGAATAACTAAATAAATCACATGGTTA4629461AATGTTGTCAATGAAATATAACTTATATGTTGTGAAAAAAAAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/Obart_v1.0/TTCATTGACAACATT
lang : en | db : Obart_v1.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.079 | 0.071 | search_plus_done; http://172.18.8.75:28181/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.006 | search_minus_done; http://172.18.8.75:28181/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.088 | 0.003 | cgi_end;

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