GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-03-29 07:18:31, GGGenome : Xenopus laevis genome, JGI 7.1/Xenla7 (Dec, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Scaffold104110:
1415399-1415413
ATTATTTCTACAAAAGTGCATTGCCTTGCA1415399TTCATTGACAACATTGAACCTCATTTTCCAGTTTGCTGCCCAATT
Scaffold14978:
646261-646275
AGAGATCAAGAGGGACAAGATGTGTTGCTT646261TTCATTGACAACATTTTCAGGTTTACCCAGGCTGGATCAGAGGTG
Scaffold152894:
1866974-1866988
ACTATATTAGACAAACAAAATGCTACAGTT1866974TTCATTGACAACATTGCATATGTCCTCTGAGGCTTTAGTGTACTG
Scaffold163806:
5408280-5408294
CACTTATTGTCTGTTACACATCGGATATGC5408280TTCATTGACAACATTTGGAAATATAAGGCTTGTAATTCATTTTGT
Scaffold219295:
1619417-1619431
GGTTGTAAACGAATTATTGTTTGAAGCAAA1619417TTCATTGACAACATTTTTCTCATGGGACACAGATTCAGAAACACT
Scaffold22415:
4262988-4263002
CACCAGCCCCATCACAGGATAACGAACTTC4262988TTCATTGACAACATTCTACGGCCGGAGTTCGGGAGGAGGAAAGAA
Scaffold227943:
436936-436950
TCAATATGAAATTATAGAAAACAATTAGTC436936TTCATTGACAACATTGACAACATTGACTTGTCATTCTGTTGCCTA
Scaffold23872:
3255414-3255428
CATTTAGCAGTCGATGTTTACTACAATCAG3255414TTCATTGACAACATTTCTATTTTTTATAAAGAAACCCCCCCCCAA
Scaffold355472:
123686-123700
GGTCGCTTTCCCGCACCGCAGCTTGGGCTT123686TTCATTGACAACATTGTCTTTAAAATATTTGGCAGGATGATTTCT
Scaffold36401:
718712-718726
ATTCTCTTTTTCAAAATCTTCAAAGAGAGA718712TTCATTGACAACATTTATAAGCCACATATAATACTCTTGGTGAGA
Scaffold58517:
1841531-1841545
TAGAACATCCTGTTCGTTTACACTAGTTCT1841531TTCATTGACAACATTAGTGTGAAGGAGTTGAATGCAGGTACTTAC
Scaffold10587:
4288990-4289004
CTTTCATGGTAAAAGTATGGAGCAATATTC4288990AATGTTGTCAATGAAAGGTCAGGCCATTTGCATTCATTAGCAGCC
Scaffold30353:
317976-317990
AATAAGGATATGCGAATGGAAATGGTGCAA317976AATGTTGTCAATGAACTCTTTAACCTATTGTTCAAAAAATAGGCA
Scaffold33059:
304408-304422
TGTAATTAAATTTACACGTGATTAGCAAAG304408AATGTTGTCAATGAAAGCGTTAAATTGCTATGAAACCTGGATTCT
Scaffold36991:
3248962-3248976
GTTTCCAGTTTACCCCAACATGATTTACCT3248962AATGTTGTCAATGAACTTGGCTTTCCCACCAAGACCTTCTGCTCT
Scaffold8129:
8930044-8930058
CACCTCTGAACCAGCCTGGGTGAACCTGAA8930044AATGTTGTCAATGAAAAGCAACACATCTTGTCCCTCTTGATCTCT
Scaffold9266:
437802-437816
TACCCCAAATAGCTATAAACAAGCTTTGTC437802AATGTTGTCAATGAAAAGCATTTAGCATAACCTACTGACGTGCTC
Scaffold939:
5873201-5873215
ATGTACACACAAAGGCAACAAAGGCAATTG5873201AATGTTGTCAATGAAAGCAAAAGCGGTCTTAGCTGCCCGCAGGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/Xenla7/TTCATTGACAACATT
lang : en | db : Xenla7 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.72:28217/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.093 | 0.013 | search_minus_done; http://172.18.8.72:28217/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=39
0.097 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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