GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-20 05:18:02, GGGenome : Cow genome, Btau_4.6.1/bosTau7 (Oct, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr4:76449596-76449610
ACTCCCCTAAATATAAGTCCCATTTCTCCT76449596TTCATTGACAACATTTCAAACAGTATATGTCTTCTGTTTAAATTT
chr7:107529683-107529697
CATGATAACAATCTGAGTCATGTAGTTGAG107529683TTCATTGACAACATTTAAATAATCCATAGCTCGTTTCCACTGTTC
chr9:14007603-14007617
CCAGAGCTTCTGCTTCTATCCTGAATTAGG14007603TTCATTGACAACATTCCCTTCACCACCCTACTCTTTCTTATACTT
chr13:82576534-82576548
AGAAGTGTAATTACTGGGTCAGAATATGGA82576534TTCATTGACAACATTTGGGCTTGTTAAAAATTCAGGTTATTGAGT
chr24:24557145-24557159
TAGAAGTTCTTAATGTTTGTTTTCTTGGCT24557145TTCATTGACAACATTCCTTTTTGTGTGACCTCATCCACTACCAGC
chrUn_JH122238:26186-26200
CAGTGACTCCCCCTGACTCACTGCTTTAAA26186TTCATTGACAACATTTTTTAAAAGGTAGAGAATTCTCATGAAAAG
chr2:60817635-60817649
GAATTTTTCACCCACAGAGTCAAAGGCTTT60817635AATGTTGTCAATGAAATGGAAGTAGATGTTTTTCTGGAATTCCCT
chr4:8709576-8709590
CTTTATTTTCTTTTGCTACAAAGTGTTCGA8709576AATGTTGTCAATGAAATGATTACTTTAAAAAAGGCAGATCATTTA
chr6:45226664-45226678
CTCTGACCCACCGTGGCATTCTCACTTCCC45226664AATGTTGTCAATGAACTTCAAACTAAGCTCTGAAGGTCAACTGGC
chr6:64395931-64395945
TTTGTTGTGATCCATATAGTCAAAGGTTTT64395931AATGTTGTCAATGAAACAGAAGTAGATGTTTTTCTGGAATTCCCT
chr7:64844840-64844854
GATGTGTGGAGGGAATGAAAGAGATTTTTC64844840AATGTTGTCAATGAATGTGTAGAGCCCCTGGTTAAAAACATATAT
chr9:85135741-85135755
CAACCACAAGAGATAGGCAGAATTTTCATC85135741AATGTTGTCAATGAATAAACTGAAGCAGAGAGAAGTTAAGCAAGA
chr14:39824363-39824377
TGTTTATATGTAACAAATTGGAAAACTTCA39824363AATGTTGTCAATGAAATCTCTTAGAAACCAATGCAAATATACTTG
chr21:3835583-3835597
AAATGTCTAGTTAAATGATGCTTTCGTTTT3835583AATGTTGTCAATGAAACATCTTAAATCTCATTGCTCTGCTCACAG
chr23:11787794-11787808
CAGTGCCTGGCGCACAGTAGGTGTGCAGTA11787794AATGTTGTCAATGAATTGATGGAAGGATGGATGGATGAATTCCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/bosTau7/TTCATTGACAACATT
lang : en | db : bosTau7 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.082 | 0.074 | search_plus_done; http://172.18.8.78:28028/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.006 | search_minus_done; http://172.18.8.78:28028/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.090 | 0.002 | cgi_end;

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