GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-11 04:48:09, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

chr2:197077860-197077874
AATGCCCCACATTTCATTAAGGGTGATGAC197077860AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
chr3:57234519-57234533
GCCTGTTTTTCATATGCATATGTAATAGGG57234519AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
chr3:97079322-97079336
AATTTGAATATTAATTTTAAAATTTATTCA97079322AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
chr5:9759503-9759517
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9759503AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG
chr7:34158561-34158575
TCTACAGATTTTGGATTTACCAGCCCCCAC34158561AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
chr7:78351404-78351418
AACTAACACCCATAAAAGGTATGACTCTTT78351404AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
chr12:79501294-79501308
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79501294AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
chr19:41398192-41398206
CTCCCTTAGGAGAGCTGTTAACATTATACT41398192AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC
chr1:83462476-83462490
CTAATTAATGAATAGTAAGTATATTTTCTC83462476TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
chr2:161223115-161223129
ATTGCAGCAAAGAAGCACATTTATATTCTA161223115TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
chr3:15289790-15289804
ATTGTAATAGCCAGAAATTGGAAACATATA15289790TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
chr3:84619845-84619859
TTGGTTTTGTATATATTAAATAGTTGAAAC84619845TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA
chr4:16134651-16134665
AACGAAAGGCGTTTGAGGAAAGCCTGATAA16134651TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
chr4:63031140-63031154
TCTTCAAATATTTTACAGAGTTCAACTCTT63031140TTCATTGACAACATTATGACATTATGCTGATTGGATCCAGTGAGT
chr4:149833218-149833232
CAGAATATATTATCGCTTTAAACACAGATT149833218TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
chr4:166722150-166722164
AAAAACGTCTGATTTTGTGTAACACTCCTT166722150TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
chr6:62708216-62708230
CTATTTCAATCAACCATCTTGTAATCATAC62708216TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
chr7:3563673-3563687
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC3563673TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
chr8:31356145-31356159
GTATTTTTAAATTCATCGATATTTCCACTT31356145TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
chr11:24494030-24494044
TTGAGTTTCCTGGAACATAGATATGTCTTG24494030TTCATTGACAACATTCTAGCATTGAGGACAGTGAATAGAGAAAAG
chr13:84765547-84765561
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA84765547TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC
chr18:27151689-27151703
ATATTTATATATGTATATATTTCATATTAT27151689TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
chr19:41567266-41567280
AAGCCACCACACCCGGCCTATCTTAGCTTT41567266TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/hg19/AATGTTGTCAATGAA
lang : ja | db : hg19 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.78:28018/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.006 | search_minus_done; http://172.18.8.78:28018/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=42
0.090 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).