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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-06 18:44:51, GGGenome : DDBJ release 125.0, HUM division (Dec, 2021)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Human BAC clone GS1-312P20 from 5p15.2, complete sequence.
AC002123.1:133597-133611
CCTGGGTATAATGCACTGATCTGCTGATCT133597TTCATTGACAACATTGCCATCGACTTTGGAGCTGGAAAGGCCCTC
Human BAC clone CTB-191D16, complete sequence.
AC002460.1:73482-73496
CAGAATATATTATCGCTTTAAACACAGATT73482TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
Homo sapiens chromosome 19 clone CTD-2356P16, complete sequence.
AC008962.9:39696-39710
AAGCCACCACACCCGGCCTATCTTAGCTTT39696TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
Homo sapiens chromosome 8, clone CTC-386L14, complete sequence.
AC090816.3:66203-66217
GTATTTTTAAATTCATCGATATTTCCACTT66203TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
Homo sapiens chromosome 3 clone RP11-421B21 map 3p, complete sequence.
AC090949.2:117016-117030
ATTGTAATAGCCAGAAATTGGAAACATATA117016TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
Homo sapiens chromosome 5 clone CTD-2105K20, complete sequence.
AC091838.2:60349-60363
CCTGGGTATAATGCACTGATCTGTTGATCT60349TTCATTGACAACATTGCCATCGACTTTGGAGCTGGAAAGGCCCTC
Homo sapiens BAC clone RP11-340B18 from 4, complete sequence.
AC097502.3:52626-52640
AAAAACGTCTGATTTTGTGTAACACTCCTT52626TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
Homo sapiens BAC clone RP11-182K3 from 2, complete sequence.
AC104598.4:73478-73492
ATTGCAGCAAAGAAGCACATTTATATTCTA73478TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
Homo sapiens 3 BAC RP11-474M18 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
AC107025.3:78694-78708
TTGGTTTTGTATATATTAAATAGTTGAAAC78694TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA
Homo sapiens BAC clone RP11-452J21 from 4, complete sequence.
AC108063.3:105748-105762
AACGAAAGGCGTTTGAGGAAAGCCTGATAA105748TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
Homo sapiens chromosome 18, clone RP11-784B15, complete sequence.
AC117569.3:88246-88260
ATATTTATATATGTATATATTTCATATTAT88246TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced.
AF491780.1:103463-103477
GTATTTTTAAATTCATCGATATTTCCACTT103463TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
Human DNA sequence from clone RP11-170N11 on chromosome 1.
AL354654.15:105182-105196
CTAATTAATGAATAGTAAGTATATTTTCTC105182TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
Human DNA sequence from clone RP11-173B15 on chromosome 6.
AL360220.12:37485-37499
CTATTTCAATCAACCATCTTGTAATCATAC37485TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
Human DNA sequence from clone RP11-661D17 on chromosome 13.
AL445604.9:147395-147409
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA147395TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC
Homo sapiens DNA, chromosome 1, nearly complete genome.
AP023461.1:82193652-82193666
CTAATTAATGAATAGTAAGTATATTTTCTC82193652TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
Homo sapiens DNA, chromosome 2, nearly complete genome.
AP023462.1:156556756-156556770
ATTGCAGCAAAGAAGCACATTTATATTCTA156556756TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
Homo sapiens DNA, chromosome 3, nearly complete genome.
AP023463.1:15266545-15266559
ATTGTAATAGCCAGAAATTGGAAACATATA15266545TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
Homo sapiens DNA, chromosome 3, nearly complete genome.
AP023463.1:84630006-84630020
TTGGTTTTGTATATATTAAATAGTTGAAAC84630006TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA
Homo sapiens DNA, chromosome 4, nearly complete genome.
AP023464.1:15398692-15398706
AACGAAAGGCGTTTGAGGAAAGCCTGATAA15398692TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
Homo sapiens DNA, chromosome 4, nearly complete genome.
AP023464.1:61636268-61636282
TCTTCAAATATTTTACAGAGTTCAACTCTT61636268TTCATTGACAACATTATGACATTATGCTGATTGGATCCAGTGAGT
Homo sapiens DNA, chromosome 4, nearly complete genome.
AP023464.1:147837180-147837194
CAGAATATATTATCGCTTTAAACACAGATT147837180TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
Homo sapiens DNA, chromosome 4, nearly complete genome.
AP023464.1:164769073-164769087
AAAAACGTCTGATTTTGTGTAACACTCCTT164769073TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
Homo sapiens DNA, chromosome 6, nearly complete genome.
AP023466.1:63311284-63311298
CTATTTCAATCAACCATCTTGTAATCATAC63311284TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
Homo sapiens DNA, chromosome 7, nearly complete genome.
AP023467.1:3516784-3516798
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC3516784TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
Homo sapiens DNA, chromosome 8, nearly complete genome.
AP023468.1:30085029-30085043
GTATTTTTAAATTCATCGATATTTCCACTT30085029TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
Homo sapiens DNA, chromosome 11, nearly complete genome.
AP023471.1:24385229-24385243
TTGAGTTTCCTGGAACATAGATATGTCTTG24385229TTCATTGACAACATTCTAGCATTGAGGACAGTGAATAGAGAAAAG
Homo sapiens DNA, chromosome 13, nearly complete genome.
AP023473.1:81762172-81762186
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA81762172TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC
Homo sapiens DNA, chromosome 18, nearly complete genome.
AP023478.1:26984782-26984796
ATATTTATATATGTATATATTTCATATTAT26984782TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
Homo sapiens DNA, chromosome 19, nearly complete genome.
AP023479.1:41222799-41222813
AAGCCACCACACCCGGCCTATCTTAGCTTT41222799TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
Homo sapiens isolate CHM13 chromosome 8.
CP061028.1:31780094-31780108
GTATTTTTAAATTCATCGATATTTCCACTT31780094TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
Homo sapiens isolate CHM13 chromosome 19.
CP068259.2:43882266-43882280
AAGCCACCACACCCGGCCTATCTTAGCTTT43882266TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
Homo sapiens isolate CHM13 chromosome 18.
CP068260.2:29761281-29761295
ATATTTATATATGTATATATTTCATATTAT29761281TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
Homo sapiens isolate CHM13 chromosome 13.
CP068265.2:83424255-83424269
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA83424255TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC
Homo sapiens isolate CHM13 chromosome 11.
CP068267.2:24603504-24603518
TTGAGTTTCCTGGAACATAGATATGTCTTG24603504TTCATTGACAACATTCTAGCATTGAGGACAGTGAATAGAGAAAAG
Homo sapiens isolate CHM13 chromosome 8.
CP068270.2:31779849-31779863
GTATTTTTAAATTCATCGATATTTCCACTT31779849TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
Homo sapiens isolate CHM13 chromosome 7.
CP068271.2:3638455-3638469
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC3638455TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
Homo sapiens isolate CHM13 chromosome 6.
CP068272.2:63143211-63143225
CTATTTCAATCAACCATCTTGTAATCATAC63143211TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
Homo sapiens isolate CHM13 chromosome 4.
CP068274.2:16114876-16114890
AATGAAAGGCGTTTGAGGAAAGCCTGATAA16114876TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
Homo sapiens isolate CHM13 chromosome 4.
CP068274.2:65602716-65602730
TCTTCAAATATTTTACAGAGTTCAACTCTT65602716TTCATTGACAACATTATGACATTATGCTGATTGGATCCAGTGAGT
Homo sapiens isolate CHM13 chromosome 4.
CP068274.2:152236106-152236120
CAGAATATATTATCGCTTTAAACACAGATT152236106TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
Homo sapiens isolate CHM13 chromosome 4.
CP068274.2:169147613-169147627
AAAAACCTCTGATTTTGTGTAACACTCCTT169147613TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
Homo sapiens isolate CHM13 chromosome 3.
CP068275.2:15250689-15250703
ATTGTAATAGCCAGAAATTGGAAACATATA15250689TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
Homo sapiens isolate CHM13 chromosome 3.
CP068275.2:84624013-84624027
TTGGTTTTGTATATATTAAATAGTTGAAAC84624013TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA
Homo sapiens isolate CHM13 chromosome 2.
CP068276.2:160824073-160824087
ATTGCAGCAAAGAAGCACATTTATATTCTA160824073TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
Homo sapiens isolate CHM13 chromosome 1.
CP068277.2:82837119-82837133
CTAATTAATGAATAGTAAGTATATTTTCTC82837119TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
Homo sapiens PAC clone RP5-982C16 from 7, complete sequence.
AC004547.1:33513-33527
AACTAACACCCATAAAAGGTATGACTCTTT33513AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
Homo sapiens clone RP11-225G18 from 7p14-15, complete sequence.
AC007350.1:94097-94111
TCTACAGATTTTGGATTTACCAGCCCCCAC94097AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
Homo sapiens, clone RP11-84A1, complete sequence.
AC007511.8:14923-14937
ACTCACTGGATCCAATCAGCATAATGTCAT14923AATGTTGTCAATGAAAAGAGTTGAACTCTGTAAAATATTTGAAGA
Homo sapiens chromosome 19 clone CTC-490E21, complete sequence.
AC008537.5:115366-115380
CTCCCTTAGGAGAGCTGTTAACATTATACT115366AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ddbj125hum/TTCATTGACAACATT
lang : en | db : ddbj125hum | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.085 | search_plus_done; http://172.18.8.78:27701/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.129 | 0.035 | search_minus_done; http://172.18.8.78:27701/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=4
0.131 | 0.003 | cgi_end;

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