GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-01 12:38:42, GGGenome : Oryza brachyantha genome, Oryza_brachyantha.v1.4b (May, 2011)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

1 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:1:1:33916305:1
position: 33490991-33491005
AGATGGAAAAAACCATTAGTATCAGATTAC33490991TTCATTGACAACATTGACATGTTGAAGTACGCTGAAAGATGGCAT
7 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:7:1:18603524:1
position: 14519962-14519976
AGATCTATCTAATTTAGATATAGCGCTCTC14519962TTCATTGACAACATTTTTCACTTCCTGCATTAGATTTCCATTATC
7 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:7:1:18603524:1
position: 18426000-18426014
GCTTGAAGAACTGTGGAAAGAAATGGATTA18426000TTCATTGACAACATTAGCACTTCTCGAGAAAAAGCAGGTATGGTG
4 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:4:1:21479432:1
position: 19667937-19667951
GATCCTGTGGACCCTGCAAAAGATGTCGAG19667937AATGTTGTCAATGAAGGCAATGCTGCATCCAAAGTTCATATAGGT
5 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:5:1:20131956:1
position: 5552582-5552596
TATGATTGAGCACTCCTACCTACTTTGCAA5552582AATGTTGTCAATGAACTGTTTGTTCGTCTACATAAATGTTCAATG
5 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:5:1:20131956:1
position: 18148510-18148524
TCATGACCAAATTACCTGAGTGAAACGGAA18148510AATGTTGTCAATGAACAGAAGCACATCTTGTCCTTCAGCATCACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/Orybr_v1.4b/TTCATTGACAACATT
lang : ja | db : Orybr_v1.4b | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.75:28182/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.006 | search_minus_done; http://172.18.8.75:28182/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.087 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).