GGGenome | Results

2025-04-08 06:52:49, GGGenome : Ipomoea nil (Tokyo Kokei Standard; TKS) genome (Sep, 2016)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

BDFN01001576.1 Ipomoea nil DNA, scaffold: scaffold1576, cultivar: Tokyo-kokei standard.
position: 4866587-4866601

ATCTCTCCAATTGCTGGTATGTCATCAGAT4866587AATGTTGTCAATGAAATGGCTGGAGAATCTACCCCTTCCACCAGT

BDFN01002537.1 Ipomoea nil DNA, scaffold: scaffold2537, cultivar: Tokyo-kokei standard.
position: 540128-540142

TTTTTTTTTATGGAAAAAGAAATTAAAAAG540128AATGTTGTCAATGAAATATATATAGTTACCTGTTTTTCTTTGTTG

BDFN01002545.1 Ipomoea nil DNA, scaffold: scaffold2545, cultivar: Tokyo-kokei standard.
position: 111092-111106

TATAAATTAAAAAAAAAAATCAATGACTTT111092AATGTTGTCAATGAAAATTATGTACGCCACTTTATTACTCTTATT

BDFN01003104.1 Ipomoea nil DNA, scaffold: scaffold3104, cultivar: Tokyo-kokei standard.
position: 2953851-2953865

GCGAGCCTTAAAGAAAAGGAGATACTGGAT2953851AATGTTGTCAATGAATCTCGGGCAAAGAAGGCATACCACTTGGAG

BDFN01000298.1 Ipomoea nil DNA, scaffold: scaffold0298, cultivar: Tokyo-kokei standard.
position: 271079-271093

AGAGATGCTGAGGGTCAGGATGTGCTTCTT271079TTCATTGACAACATTTTCAGGTTCACACAGGTTTGTTTATTTCTA

BDFN01000465.1 Ipomoea nil DNA, scaffold: scaffold0465, cultivar: Tokyo-kokei standard.
position: 2405428-2405442

CAACCATATTGTTCTTATGTTTCAGTTTGT2405428TTCATTGACAACATTATTATAACTTGTGTAACAGGTTGGGTAAAT

BDFN01001834.1 Ipomoea nil DNA, scaffold: scaffold1834, cultivar: Tokyo-kokei standard.
position: 3641579-3641593

ATAATCAGTCAATTTTTGAAACTTCAGTTT3641579TTCATTGACAACATTTAATCATTTTTTTAATTTCAAAATGAAGGA

BDFN01002694.1 Ipomoea nil DNA, scaffold: scaffold2694, cultivar: Tokyo-kokei standard.
position: 2654643-2654657

GTTAGTTATTGTCCAGAAATTAATTTCTGA2654643TTCATTGACAACATTTATATATATATATATATATATATATATATA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.72:28270/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.006 | search_minus_done; http://172.18.8.72:28270/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=46
0.089 | 0.003 | cgi_end;