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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-18 20:26:03, GGGenome : Human genome, NCBI36/hg18 (Mar, 2006)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:83235064-83235078
CTAATTAATGAATAGTAAGTATATTTTCTC83235064TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
chr2:160931361-160931375
ATTGCAGCAAAGAAGCACATTTATATTCTA160931361TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
chr3:15264794-15264808
ATTGTAATAGCCAGAAATTGGAAACATATA15264794TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
chr3:84702535-84702549
TTGGTTTTGTATATATTAAATAGTTGAAAC84702535TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA
chr4:15743749-15743763
AACGAAAGGCGTTTGAGGAAAGCCTGATAA15743749TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
chr4:62713735-62713749
TCTTCAAATATTTTACAGAGTTCAACTCTT62713735TTCATTGACAACATTATGACATTATGCTGATTGGATCCAGTGAGT
chr4:150052668-150052682
CAGAATATATTATCGCTTTAAACACAGATT150052668TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
chr4:166941600-166941614
AAAAACGTCTGATTTTGTGTAACACTCCTT166941600TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
chr6:62766175-62766189
CTATTTCAATCAACCATCTTGTAATCATAC62766175TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
chr7:3530199-3530213
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC3530199TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
chr8:31475687-31475701
GTATTTTTAAATTCATCGATATTTCCACTT31475687TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
chr11:24450606-24450620
TTGAGTTTCCTGGAACATAGATATGTCTTG24450606TTCATTGACAACATTCTAGCATTGAGGACAGTGAATAGAGAAAAG
chr13:83663548-83663562
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA83663548TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC
chr18:25405687-25405701
ATATTTATATATGTATATATTTCATATTAT25405687TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
chr19:46259106-46259120
AAGCCACCACACCCGGCCTATCTTAGCTTT46259106TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
chr2:196786105-196786119
AATGCCCCACATTTCATTAAGGGTGATGAC196786105AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
chr3:57209559-57209573
GCCTGTTTTTCATATGCATATGTAATAGGG57209559AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
chr3:98562012-98562026
AATTTGAATATTAATTTTAAAATTTATTCA98562012AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
chr5:9812503-9812517
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9812503AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG
chr7:34125086-34125100
TCTACAGATTTTGGATTTACCAGCCCCCAC34125086AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
chr7:78189340-78189354
AACTAACACCCATAAAAGGTATGACTCTTT78189340AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
chr12:78025425-78025439
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA78025425AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
chr19:46090032-46090046
CTCCCTTAGGAGAGCTGTTAACATTATACT46090032AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg18/TTCATTGACAACATT
lang : en | db : hg18 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.76:28116/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.007 | search_minus_done; http://172.18.8.76:28116/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=35
0.093 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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