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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-27 14:04:23, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:1930393-1930411
TAAATAAATAGCTCATGTTCAAGCACTACA1930393AACTCAATGTTGTCAG-GAAGTCAGTTCCTTCCAGATTGCTCTATAGATT
chr1:155825361-155825379
GTAGATACTCAATGTATCACTGAGTATTGA155825361TACTCAATG-TGTCACTGAATATTGTAGATACTCAATGAATGCTCCCTGA
chr3:49831283-49831301
GCAAAGGTGGTAGGACCACCAGAGGTGTAG49831283TACTCAATGTTGTCA-TGAGGGTAATCCATATCCGTGCCCACCACGGAGC
chr3:185466113-185466131
CTACTAGGTATGCGATATACTGCCTGCCTG185466113TACTCAGTG-TGTCAGTGAACAAGTACTACTGTGTCTTAATATCAGAAGT
chr4:19225840-19225857
TTTTATTATGTGTTTATACCATAGTTTCTT19225840TACTCAA--TTGTCAGTGAACATTTCAGTTCCTTTATCTTGGCTATTTTC
chr4:74112901-74112919
CCAAATGAAAAACAAAGATTAAAAAACTTA74112901TACTCAATGTTGACAGT-AATCAGAAAAATGAAAACAAAACACCATTTTT
chr5:128909692-128909711
AAAATGGCAGCTTTCTATTCATCACACATT128909692TACCCAATGTTGTCAGTGAACAATAATACTTGTTAAGCATCTACTAAGTA
chr5:155592328-155592345
CTTTATGTTCCATCTGCTCTTTAATCTTGC155592328TACTCAATGTTGT--GTGAAATCAAAACTTTTAAAAAATGAAAAAAAAGT
chr6:46475671-46475690
GATCCCTGGCCTATGATAAGCAGGATTTAT46475671TA-TCAATGTTGTCAGTAGAAACTATCCACTAGGTGGGTAACCATATTGTT
chr6:66953409-66953427
GTTTGTTGTTGTTGTTGTTGTTCTTTTTAT66953409TGCTCAATGTTGTCAG-GAAACTATGTTGAACAAACTGATGTTATTGAGG
chr6:76019496-76019513
CCAAATCAGAAACCCAAGAGTCACCCTCTC76019496TACTCAAT-TTGTCA-TGAAATCGTTATGATTCTGTCTTCACTATATCTC
chr6:127178654-127178672
TGTGTTTTATTCTTGGTACATTACATTTGT127178654TACTCAATGTT-TCAGTTAAGTTGAATCTGCTTTATGAAACTTAAAATCC
chr6:134357750-134357771
TTCACCGCTAGCCTTCTGGCACAAAGTAAA134357750TACTCAATGTTTGTCGAGTGAATGAATGAATGAATGAAAACAACACTCCAGA
chr7:88176906-88176924
AACAGAGGACAAAGTTGGAGTCCGCTCCTC88176906TACTCACTGTT-TCAGTGAATGTTGTGCTTTGGTATCCTAGACGAGGTCC
chr9:3285527-3285545
ACAACAGGGTAACTGGTTTCAGTTAAGGCT3285527TA-TCAATGTTGTCAGTGGACAGATTCCTTCAGAGAGACCACAGAAGACT
chr10:88232016-88232035
GGCTGAGTGCTCTTTAAGCCACTTAACAAG88232016TACTCAATGTCATCAGTGAACTCTTGATTTTCACCAAATTCTACAACATC
chr11:41712741-41712760
CTTTCTCTGTATCCATCAGGCAGGCCTGGA41712741TACTCAATGTTGTCAGCAAAAACAAAAAATAATCAATGAATAAATAAAAA
chr12:8921837-8921855
TTACCCTATTACCTTCTGATTTTCTTGACT8921837TACT-AATGTTGTCAGAGAATGTGGCCTGTAACATTTTTTTTTAATTTCA
chr12:74787533-74787552
CCTCAACAAATAAAAATGTCTCTTCTACCC74787533TGCTCAATGTTCTCAGTGAATAATTAGAGTTGATAATTCCACAATTTCAT
chr12:89847552-89847571
AGTTAGGAACTGAAATAACTCTGAACTAGT89847552TACTCAATGTTGTCTAGT-AACCAGGATGAACTGTTGCCACAACATTCATG
chr13:88538170-88538187
AAAGTCAGAAGTTAACTATCAGGCTAATGT88538170TACTCAAT-TT-TCAGTGAAGCAGTTGTTCTTGTTCTTTCATCTGTGTCT
chr13:93275497-93275516
ATGTTTAGGTAAAGAGCAAGACTGCAGAAA93275497GACTCAATGTTGTCAGTAAAAGAGTGAAGTGGTTGCACGGCTCATCTGCT
chr13:97401657-97401675
TGCATGTATATAGTTTGGATTATACATATA97401657TACTCAAT-TTGTCAGTAAACATGTAGATTAATTTTGCTAATATTTTATT
chr14:84860299-84860317
ATAAGGACAACTTTTATAACTATAAGTCTA84860299TCCTCAA-GTTGTCAGTGAAATAACATTTTAGAAAATACTAATTTGTTGC
chr14:91733346-91733364
TTCAGAAACTACCACTTGATTAAACAAAGT91733346TACTC-ATGTTTTCAGTGAAGTTCTGACATACATCTTTGACTTGTTTCCC
chr16:80781431-80781448
ACGTGCTTAATAAATGCCAGGGATTGTTGT80781431TAC-CAATGTTGTC-GTGAATAGTGGTAGTGGTGGTGAATAGTAGCTGGT
chr18:69141542-69141560
TTGCAAAGTGCCAAATTTCTATGATGTTTC69141542TATTC-ATGTTGTCAGTGAATATATTTACTTATATCTAAGACTTATAATA
chr19:10424271-10424288
TCATCTATAATAGGGAATAACAGTCTCTAC10424271TACTCAA-GTTGTCA-TGAAGATTCAGTCAGTGAATATTTATTAACATGG
chr19:41398188-41398206
TTGACTCCCTTAGGAGAGCTGTTAACATTA41398188TACT-AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC
chr21:20944486-20944505
CACCAAACTTCAAAAGAAAGACCAAAAGAT20944486TACTAAATGTTGTCATTGAAATAAATATGAGCTATACATACATTCAAAAA
chrX:26589179-26589197
ATATTTGAGTTCTGTAAAGATAATGGGCTA26589179TACTTAA-GTTGTCAGTGAACCTCTATTTATGGCACAATGCATAACAAAC
chrX:54729713-54729732
TTATAATTAATTACAAAACCTATAAGACAA54729713TACTCTATGTTGTCAATGAATAGGTTAATATGTAGTGAAAGTATAAGAAC
chrX:92796390-92796409
ATTTTAGACATAGAAATAAGAAGACATAAA92796390GACTGAATGTTGTCAGTGAAGAACAGAGAGGACTCAAGTATGACTTTTAG
chr1:77930953-77930971
AGCAGTACTCAAGATCACCTTTTTTTAAAG77930953TTCACTG-CAACATTCAGTAGATGAAAAATGTGTAGCTGTAATTCATTGA
chr1:106947513-106947532
TAGAAAACATACCACATAAAGAAGCAATCT106947513TTCACTGCACAA-ATTGAGTATAAAATTTAACCCGTTTGAAAGGGTCATTA
chr2:30898313-30898332
GCCCCCAGCCACTTATATGTATTTTTTAAA30898313TTCACTGACAACATTGAGTAGAAAAGATAATTTTTTTTTTTTTGAGACAG
chr2:141517099-141517117
TTTATTTTCTTTAACACAGCCTTTGATAAA141517099TTCACTGAC-ACATTGAGTTAGCCATAGTGTGTAATGGGAGACTGCCCAG
chr2:163535086-163535106
TGAGAAAGAGGACACCCTAAGAATTATGGC163535086TTCACTGACAACATTAGAGAACATATCAAACTCAAACGAATATTCTGGGGT
chr2:186291305-186291324
ATTATGAACAGAAAAAAAGCAAAGGTTACT186291305TTCACTGAGCAACATTGAG-ATAGAGTTTCTTTTGGACACTTAATTTTGTA
chr2:206339508-206339526
GTAATGCAGAAAATAGCTAATTTCACCCCA206339508TTC-CTGACAACTTTGAGTATCATCACTTTCCTTCCTTTACCCTTTACTA
chr2:235498941-235498960
GGAGCACAGCTGCAGTTGAACTCAGTTGGT235498941TTCACTGAC-ACATTGCAGTAGGCAGAAGAATCATGGGCACGTAGGTAAGA
chr3:7763221-7763239
CACTTGATCAGTGCAGACATAGATCAATTC7763221TTCACTG-CAAAATTGAGTAGTGAATAAATAAACTTACTTCAGCTAACCT
chr3:107912698-107912716
ATATGTTTGGAAGAACTAGGCATATGCACA107912698TTCACTGGC-ACATTGAGTACCTGTCTTAGACTCTACGAGACCCAGCTTC
chr3:119451773-119451792
GTTCAAAAGAGGCTTATTTAGTTATTTAAT119451773TTCACTGACAA-ATTGAAGTATCACATGGCCAAGATCATGAGTTGCTGGTT
chr3:176282654-176282673
TCAGAATAAAAAAAATGATTATGTATGATT176282654TTCACTGACCATATTGAGTATAGGAATGGTAACACTGTGTTAGTTACATG
chr4:127134996-127135015
CTTTTTGTGAAATAGGAATTTAAAGTCAAT127134996TTCACTGAGAACATTGAGGACTTTTTTTTTGCCTTTTAAGAGTCATGCTC
chr4:128011907-128011924
CTCCCACACAATAATGGGAGAGTTTAACCC128011907TTCACTGACAACATT-AG-ACAGATCATCAAGACAGAAAATCAACAAAGA
chr5:59044793-59044811
TCCCAGATACAGCTTCAGATGACTATAGCC59044793TTCACTGACAAC-TTGAGTGCAATTTCTTCTAGGAACTTTAGTCAGAACC
chr5:86132917-86132934
ACTAGAGTTGGAAAGAATTTTATTTTTATT86132917TTCACTGA-AA-ATTGAGTAAAAAATGTGAATATAAATGCTATTATGTGA
chr6:22543169-22543188
TGTGGCATACATTTATTTTTGAATAAATTG22543169TTCACTGGCAACATTGAGTTTAAGAAGAAGGGTGAAAAATTACTTGGAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/2/TACTCAATGTTGTCAGTGAA
lang : en | db : hg19 | k : 2 | strand : | nogap : | query_string : TACTCAATGTTGTCAGTGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.681 | 0.671 | search_plus_done; http://172.18.8.78:28018/match?q=TACTCAATGTTGTCAGTGAA&k=2&no_gap=0&offset=0&limit=50
1.141 | 0.460 | search_minus_done; http://172.18.8.78:28018/match?q=TTCACTGACAACATTGAGTA&k=2&no_gap=0&offset=0&limit=17
1.145 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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