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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-27 04:12:22, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:346451-346460
GATAAAAAAGTGAACATGTATATTTACAGT346451TTGTCAAGGAATGATAAATGAAGACTCTTAAAGTAGATGG
chr1:373263-373272
TCGTTTCCCCATTGCTTGTTTTTGTCAGGT373263TTGTCAAAGATCAGATAGTTGTAGATGTGTGGTGTTATTT
chr1:383220-383229
AATTAGAAGAACAAGAGGATGCAAAGGGGT383220CTGTCAAAGATTCAGTGAAATGAGGGTTTTTGGATATTCA
chr1:766930-766939
ATTTAAATTAAGTGACGGGTAGTGAGGTGT766930TTGTCAAGGAAAGTGCCGTCCAAATGCTAAATACTGATTA
chr1:819637-819646
TCCTTTCCCCGTTGCTTGTGTTTGTCAGGT819637TTGTCAAAGATCAGATGGTTGTATGTGTATGCTCTTATTT
chr1:1197006-1197015
AAAAAAAATGTAAAGCTGGCATAATTTTGC1197006TTGTCAAAGACCACCACCCATTTTGGTTTTTTTTTTTTTT
chr1:1997176-1997185
TGTGGTCAATCATCCCTGCCTTTGTCCTGA1997176TTGTCAAAGAAAAGCTTTCAGGTTTTCATCACTGAGTGTG
chr1:2047839-2047848
TCCAGTCTTTTGCCCCATTTCAAAATTGGG2047839CTGTCAAAGAACAATGTCATTGGGGGGTCCGTCTTTTTTG
chr1:2296288-2296297
TCCTTTCCCCATTGCTTGTTTTTCTCAGGT2296288TTGTCAAAGATCAGATAGTTGTAGATACGCAGCGTTATTT
chr1:2809079-2809088
CCCAGCTCAGCCCGCACGCTTCAAGCAGGG2809079CTGTCAAGGAAAATTAAGACCCAGTTTGCTTTCAGAGTTA
chr1:3104329-3104338
TTGGTAGCTCACAGAGTCCTGTGTGGCTCC3104329TTGTCAAGGATATAGGGAGACTCAGGAGCTACTCCCTGAG
chr1:3740366-3740375
TCCTGTCATCTTAGCATCGGGCAGGGGCCA3740366CTGTCAAGGATGGGGAAGCTACGGTCGGCCTGAGTGTGAA
chr1:3774972-3774981
TGTTCAGCTCCTGGCAGCAGGGAGGCGGCG3774972CTGTCAAAGACAGGCTCTATTTGAAGCGCCCTCAGGAGCT
chr1:4022477-4022486
AACTCGCTCAGTGGAGGGTGATAGTAGAGG4022477CTGTCAAAGAAAATGGGAGTCATTAAAGTGCTAAAATAAG
chr1:4023537-4023546
GCCACAGCAGAGTCAGGTCCAGGAGAGGAC4023537TTGTCAAGGACCAGGAGCTGGAAAAGAGGCTTCCCTGCTG
chr1:4051061-4051070
TCCTTTCCCCATTGCTTGTTTTTGACAGCT4051061TTGTCAAAGATCAGATGGTTATAGGTGTGTGGCCTTATTT
chr1:4229273-4229282
GCAATTATTCATTCTTCTTACCTGTCTACA4229273TTGTCAAGGAAGTTCTGCAGATACAGAAAATGAAGAAGAC
chr1:4347464-4347473
TCCTTTCCTCATTGCTTATTTTTGTAGACT4347464TTGTCAAAGATCAGATGGTTGTAGGTGTGTGGCTTTATTT
chr1:4693764-4693773
TGCTGAGCAGTGCGGGCCAAGGAGTCCCAT4693764CTGTCAAAGAAACCCATGGTGGATGGTAGCTGAAGCGATA
chr1:4922111-4922120
TCCTTTCCCCATTGCTTGTTTTTCTCAGGT4922111TTGTCAAAGATCAGATGGTTGTAGATATGCGGCATTATTT
chr1:5043929-5043938
TCCCCATGTTGAAATTATTGGTCATGGATG5043929CTGTCAAGGAAAACTTGCAATGGATGGAGGTAAACAGGCA
chr1:5352025-5352034
CTGGCTGTGCACACAACCCTTTGGTTGAAA5352025CTGTCAAGGAACCTGTGAGAAAGCAGCCTGGGGTTGAGCC
chr1:5389362-5389371
AAATATTACAGCAGAGAGTGGTGCTTAGGG5389362CTGTCAAGGAGAATACTTTCTGTTCTCTATTAATGTGCTC
chr1:5423290-5423299
AAAGGCAATGGCTGCCATCTAGCATACATG5423290CTGTCAAGGACATGAGATGGGAAGCAAGCAGTCATGGAAA
chr1:5597972-5597981
GGTTATATATCCAAAGAAAATAATATCAAT5597972CTGTCAAAGAGTTATCTCCACTTCCATGTTTATTGCAGCA
chr1:5660594-5660603
TCCTGACAAGTGCAATTGTTTTAGCAGAGT5660594CTGTCAAAGAGAGAGGCCTCCCAGGGCGGGCAGATTCCAT
chr1:5833908-5833917
GGCCACCCCCTCATCACAATTGGCTCTGAC5833908TTGTCAAAGAAGGCCTGCTTTTTCCCTACCCCCTGGTCTG
chr1:5866798-5866807
GGTAGTAGCAAAAGTGCTGAGAAATGGGCA5866798TTGTCAAAGAGACTCGAGTTCTAGAATATCCCTGATTTTA
chr1:5951089-5951098
CCATGTACCTCAGCTGGAAGCCAGGAGACC5951089CTGTCAAAGAGGCACCAAAGGAGGCCAAAAGTAATTGGAG
chr1:6014350-6014359
TCCTGCTGAATAAGAACAAAAAAAATCATA6014350CTGTCAAAGATTTAATAAATTGAGAAATAATCGTAATATT
chr1:6042572-6042581
CCTAACACCATTTCTCAGAATGTGTCGGCA6042572CTGTCAAGGAACCATGCATAACTGTATTTACCATTTCCTT
chr1:7119323-7119332
GAGACTCAAGAATGGTTCATTAAAATAATT7119323TTGTCAAGGAGGTGGTGGGTGGAAGAGGTGGGGGTAACAA
chr1:7125867-7125876
TTTCTTTCAACCTGGTAAAATAGTTTTCTT7125867CTGTCAAAGAGCAAGTGGCCTTTAAGGCATGTTTATCTAT
chr1:7276415-7276424
ACATGCAAACCACATCAGTGACAAATTGAT7276415TTGTCAAGGAAATTGATTATATTGTTTAGGGCTTCTGTGT
chr1:7303576-7303585
TCATTTCCCCATTGATTGTTTCTGTCAGGT7303576TTGTCAAAGATCAGATAGTTGTAGATACGCAGCATTATTT
chr1:7473104-7473113
TCCTTTCCCCATTGCTTGTTTTTCTCAGGT7473104TTGTCAAAGATCAGATAGTTGTAGACATGCAGCATTATTT
chr1:7773860-7773869
TTTCTAGGAGAGGACTCACAGCCTTTATAA7773860TTGTCAAAGAGCCCCTGAACAGAAAGCGCAAGAATTGTTG
chr1:7847718-7847727
ATTAGAGCAGTGATGCTTATGTAATGAGGT7847718TTGTCAAGGACAGCTTCTTGAAGAAGGTGAATCTTCAGTG
chr1:8163298-8163307
ATAAAGACATTGAGTCTTTATTCATAATAA8163298TTGTCAAAGAACCAGAAACAACCCAAATGCCCATCCACAG
chr1:8208342-8208351
CAGATGGGTCTAACCACATGGAATGACAGG8208342CTGTCAAGGACTGTGGGGAGACAGGTCCAAATAAAACTAA
chr1:8509671-8509680
CATCTAGGTATGAAAAACGCACAGATTGCT8509671CTGTCAAAGACCACTACGTGACTGCACTTCCATAGCAGAG
chr1:8624749-8624758
TGTGAATTTACCAAAATATTTAAAATCAGT8624749TTGTCAAAGAGAAGCCTGCACTCCCAAGTTTATCACAGTA
chr1:8693981-8693990
GCACTCCAGCCTGAGCAACAGAGTGAGACT8693981CTGTCAAAGAAAGAAAAGAGGAAGAGAAATGAACTTATCA
chr1:8734767-8734776
ATGTTGACTTGACAAACTTCCTCAATTTTG8734767TTGTCAAGGAAAAATACGCATTTCATACTCCATTTTACAT
chr1:8819202-8819211
AAAATAAATAAAAATAAAAAGATACTGTGA8819202TTGTCAAAGAAAGGAAAGAGGTATTAAGTCACTGAAAGGT
chr1:8985867-8985876
ACACCTGCCAACTCAAGCAGGAGTTATACA8985867CTGTCAAGGACCCCAAACAGGATCAGATAACATTTCAAGA
chr1:9390152-9390161
AGGACACAAGGCATCTCTTCTCACTGTAGT9390152TTGTCAAAGATCAGTGGCGTAAATAATTGCTAGGTGCTTG
chr1:9559739-9559748
TCTTTGCTCTATTGTATTGCTTTTGCTCTT9559739TTGTCAAAGATCAGTTGACTCTACTTATGTGGGTCAATTT
chr1:9905913-9905922
AAAAAAAAAAGACCGAGACATAGGAGACAC9905913CTGTCAAAGATGTTTGTGAAGATCCACCTCCTTCCACTGG
chr1:10186678-10186687
GAATTCAGCTGTATTACTTTATGGTTAGAC10186678TTGTCAAAGAACAGGTCAACACTCTGGCTGAATTCTAGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/YTGTCAARGA
lang : en | db : hg19 | k : 0 | strand : | nogap : | query_string : YTGTCAARGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.182 | 0.174 | search_plus_done; http://172.18.8.78:28018/match?q=YTGTCAARGA&k=0&no_gap=0&offset=0&limit=50
0.299 | 0.116 | search_minus_done; http://172.18.8.78:28018/match?q=TCYTTGACAR&k=0&no_gap=0&offset=0&limit=0
0.299 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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