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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-25 00:49:41, GGGenome : Human unspliced mRNA, GENCODE27 20170925 on hg38 (Apr, 2018)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

ENST00000419658.1,ENST00000452901.5|LINC01362|cage_peaks_associated=&cage_peaks_expressed=&coord=chr1:82903182:83166815:+
position: 93611-93625
CTAATTAATGAATAGTAAGTATATTTTCTC93611TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
ENST00000260983.7,ENST00000409111.2,ENST00000427457.1,ENST00000452031.5,ENST00000462290.1,ENST00000498146.1|HECW2|cage_peaks_associated=hg_33010.1,hg_33012.1,hg_33013.1,hg_33014.1,hg_33015.1,hg_33016.1,hg_33019.1,hg_33020.1,hg_33021.1,hg_33034.1,hg_33035.1,hg_33036.1,hg_33037.1,hg_33038.1,hg_33039.1,hg_33040.1,hg_33041.1,hg_33042.1,hg_33043.1,hg_33044.1&cage_peaks_expressed=,adopose,basophils,brain,heart,kidney,liver,neutrophils,retina,small_intestine,stomach&coord=chr2:196194369:196593692:-
position: 380543-380557
TGACAGTATAGTTATATGAGAAGCAACTTC380543TTCATTGACAACATTGTCATCACCCTTAATGAAATGTGGGGCATT
ENST00000253693.6,ENST00000415565.1,ENST00000418994.1,ENST00000443567.5,ENST00000457023.1,ENST00000463417.5,ENST00000472400.1|CAPN7|cage_peaks_associated=,hg_35497.1,hg_35498.1&cage_peaks_expressed=,B_cells,T_cells,adopose,basophils,brain,colon,heart,kidney,liver,neutrophils,retina,skeletal_muscle,small_intestine,stomach&coord=chr3:15206151:15252918:+
position: 42132-42146
ATTGTAATAGCCAGAAATTGGAAACATATA42132TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
ENST00000295934.7,ENST00000473921.2,ENST00000495160.2|HESX1|cage_peaks_associated=hg_42646.1,hg_42647.1&cage_peaks_expressed=&coord=chr3:57197842:57226521:-
position: 26017-26031
ACTATGCTGCACTCCAAATACTATTGTGTT26017TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
ENST00000382492.3,ENST00000504182.2,ENST00000506620.1,ENST00000511616.5,ENST00000512976.5,ENST00000514078.1,ENST00000606169.1,ENST00000606222.1,ENST00000606744.1|AC026787.1,LINC02112,TAS2R1|cage_peaks_associated=,hg_60882.1&cage_peaks_expressed=&coord=chr5:9621376:9903826:-
position: 144422-144436
CCTGGGTATAATGCACTGATCTGTTGATCT144422TTCATTGACAACATTGCCATCGACTTTGGAGCTGGAAAGGCCCTC
ENST00000389531.7,ENST00000404826.6,ENST00000426596.1,ENST00000466611.1,ENST00000467827.1,ENST00000476701.5,ENST00000478527.1,ENST00000481856.1,ENST00000484011.1,ENST00000615806.4|SDK1|cage_peaks_associated=,hg_77045.1,hg_77046.1,hg_77047.1,hg_77048.1,hg_77049.1,hg_77067.1,hg_77068.1&cage_peaks_expressed=,B_cells,adopose,brain,colon,heart,kidney,retina,skeletal_muscle,small_intestine,stomach&coord=chr7:3301447:4269000:+
position: 222594-222608
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC222594TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
ENST00000354212.8,ENST00000391180.1,ENST00000419488.5,ENST00000440555.2,ENST00000517762.2,ENST00000519748.5,ENST00000520379.2,ENST00000522342.3,ENST00000522391.3,ENST00000524268.1,ENST00000524316.5,ENST00000535697.5,ENST00000626691.2,ENST00000628361.1,ENST00000628781.1,ENST00000628980.2,ENST00000628997.1,ENST00000629359.2,ENST00000630991.2,ENST00000634996.1,ENST00000635863.1,ENST00000635961.1,ENST00000636039.1,ENST00000636040.1,ENST00000636178.1,ENST00000636234.1,ENST00000636424.1,ENST00000636593.1,ENST00000636717.1,ENST00000636936.1,ENST00000636989.1,ENST00000636993.1,ENST00000637074.1,ENST00000637136.1,ENST00000637249.1,ENST00000637282.1,ENST00000637441.1,ENST00000637486.1,ENST00000637515.1,ENST00000637585.1,ENST00000637728.1,ENST00000637824.1,ENST00000637879.1,ENST00000637976.1|MAGI2,RNU6-530P|cage_peaks_associated=,hg_84481.1,hg_84482.1,hg_84483.1,hg_84484.1,hg_84487.1,hg_84490.1,hg_84491.1,hg_84492.1,hg_84493.1,hg_84494.1,hg_84504.1,hg_84505.1,hg_84506.1,hg_84507.1,hg_84508.1,hg_84509.1,hg_84510.1&cage_peaks_expressed=,adopose,brain,colon,heart,kidney,liver,retina,skeletal_muscle,small_intestine,stomach&coord=chr7:78017056:79453574:-
position: 731473-731487
TATATTTGTTATAGAATATTATGTTAAATC731473TTCATTGACAACATTAAAGAGTCATACCTTTTATGGGTGTTAGTT
ENST00000261205.8,ENST00000393240.7,ENST00000408861.1,ENST00000446242.3,ENST00000457153.6,ENST00000547046.5,ENST00000549454.5,ENST00000549559.2,ENST00000549671.5,ENST00000551304.5,ENST00000552074.5,ENST00000552624.5,ENST00000552744.5|MIR1252,SYT1|cage_peaks_associated=,hg_127016.1,hg_127017.1,hg_127018.1,hg_127019.1,hg_127020.1,hg_127021.1,hg_127022.1,hg_127027.1,hg_127028.1,hg_127029.1,hg_127030.1,hg_127031.1,hg_127035.1,hg_127036.1,hg_127037.1,hg_127038.1&cage_peaks_expressed=,B_cells,brain,colon,kidney,retina,small_intestine,stomach&coord=chr12:78863992:79452008:+
position: 243522-243536
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA243522AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
ENST00000263369.3,ENST00000303961.8,ENST00000357052.7,ENST00000378307.9,ENST00000406058.6,ENST00000593317.1,ENST00000593397.1,ENST00000593445.5,ENST00000593477.1,ENST00000593525.1,ENST00000593726.5,ENST00000593972.1,ENST00000594136.1,ENST00000594140.5,ENST00000594380.1,ENST00000594436.5,ENST00000594800.5,ENST00000595051.1,ENST00000595621.1,ENST00000596216.1,ENST00000596517.1,ENST00000597140.5,ENST00000597476.5,ENST00000597600.5,ENST00000597746.5,ENST00000597784.5,ENST00000598430.1,ENST00000598654.1,ENST00000599579.5,ENST00000600078.5,ENST00000600729.1,ENST00000601159.5,ENST00000601627.1,ENST00000601733.1,ENST00000601949.5,ENST00000602069.5,ENST00000602166.1,ENST00000602173.5,ENST00000623128.1|AC008537.1,AC008537.3,EGLN2,MIA,MIA-RAB4B,RAB4B,RAB4B-EGLN2|cage_peaks_associated=,hg_175901.1,hg_175902.1,hg_175903.1,hg_175904.1,hg_175905.1,hg_175906.1,hg_175908.1,hg_175909.1,hg_175910.1,hg_175911.1,hg_175912.1,hg_175913.1,hg_175914.1,hg_175915.1&cage_peaks_expressed=,B_cells,T_cells,adopose,basophils,brain,colon,heart,kidney,liver,neutrophils,retina,skeletal_muscle,small_intestine,stomach&coord=chr19:40771647:40898282:+
position: 120640-120654
CTCCCTTAGGAGAGCTGTTAACATTATACT120640AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC
ENST00000348849.7,ENST00000392753.7,ENST00000409075.5,ENST00000409289.6,ENST00000409972.5,ENST00000428519.1,ENST00000464200.1,ENST00000474147.5,ENST00000474820.5,ENST00000475103.5,ENST00000477486.1,ENST00000477965.1,ENST00000490637.5,ENST00000491781.5,ENST00000492283.1,ENST00000585005.1|MIR4785,RBMS1|cage_peaks_associated=,hg_31488.1,hg_31489.1,hg_31490.1,hg_31491.1,hg_31492.1,hg_31495.1,hg_31496.1,hg_31497.1&cage_peaks_expressed=,B_cells,T_cells,adopose,basophils,brain,colon,heart,kidney,liver,neutrophils,retina,skeletal_muscle,small_intestine,stomach&coord=chr2:160272150:160493794:-
position: 127177-127191
AAGTTCCAAAGTAAATTTGCATTATATGCT127177AATGTTGTCAATGAATAGAATATAAATGTGCTTCTTTGCTGCAAT
ENST00000389672.9,ENST00000470610.6,ENST00000477384.6,ENST00000502694.1,ENST00000503760.5,ENST00000506349.1,ENST00000506569.1,ENST00000508345.5,ENST00000514100.5|EPHA6|cage_peaks_associated=,hg_228825.1,hg_37502.1,hg_37503.1,hg_37504.1,hg_37505.1,hg_37506.1,hg_37507.1,hg_37508.1,hg_37511.1&cage_peaks_expressed=,brain,colon,retina,small_intestine,stomach&coord=chr3:96814580:97752460:+
position: 545898-545912
AATTTGAATATTAATTTTAAAATTTATTCA545898AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
ENST00000502339.1,ENST00000504135.5,ENST00000506704.5,ENST00000509461.5|ADGRL3-AS1|cage_peaks_associated=&cage_peaks_expressed=&coord=chr4:62071751:62165554:-
position: 119-133
ACTCACTGGATCCAATCAGCATAATGTCAT119AATGTTGTCAATGAAAAGAGTTGAACTCTGTAAAATATTTGAAGA
ENST00000281156.4,ENST00000511849.2|AL049544.1,KHDRBS2|cage_peaks_associated=hg_74195.1,hg_74196.1,hg_74197.1,hg_74198.1,hg_74199.1,hg_74200.1&cage_peaks_expressed=B_cells,basophils,brain,colon,kidney,retina,skeletal_muscle,small_intestine,stomach&coord=chr6:61630232:62286227:-
position: 287903-287917
AGAAATAGCAACTTATTATAGTATGAGTAA287903AATGTTGTCAATGAAGTATGATTACAAGATGGTTGATTGAAATAG
ENST00000297161.6,ENST00000436222.5,ENST00000444773.1,ENST00000448280.5,ENST00000476525.1,ENST00000494786.1,ENST00000496609.1|BMPER|cage_peaks_associated=,hg_230383.1,hg_230384.1,hg_78082.1,hg_78083.1,hg_78084.1,hg_78085.1,hg_78086.1,hg_78087.1,hg_78088.1,hg_78089.1,hg_78093.1&cage_peaks_expressed=,adopose,brain,colon,liver,retina,skeletal_muscle,small_intestine,stomach&coord=chr7:33904910:34155872:+
position: 214039-214053
TCTACAGATTTTGGATTTACCAGCCCCCAC214039AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg38_wgEncodeGencodeCompV27_unspliced_20180411/TTCATTGACAACATT
lang : en | db : hg38_wgEncodeGencodeCompV27_unspliced_20180411 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.75:28725/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.009 | search_minus_done; http://172.18.8.75:28725/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.095 | 0.005 | cgi_end;

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