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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-04-19 08:39:06, GGGenome : Solenopsis invicta genome, Si_gnG (Feb, 2011)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Si_gnG.scaffold20281 dna:supercontig supercontig:GCA_000188075.1:Si_gnG.scaffold20281:1:662:1
position: 335-349
ATTTTATGCGAGAAAAACATGCATTCAACT335TTCATTGACAACATTCTTCTTTATCTCTTATAGTTTCGACGATAC
Si_gnG.scaffold38403 dna:supercontig supercontig:GCA_000188075.1:Si_gnG.scaffold38403:1:718:1
position: 312-326
TACATTAAATTTTTGTTACGTAACTTAATT312TTCATTGACAACATTAAAATGCTTTTACCCTGATAGCACATAAAG
Si_gnG.scaffold08197 dna:supercontig supercontig:GCA_000188075.1:Si_gnG.scaffold08197:1:3148:1
position: 668-682
TACATTAAATTTTTGTTACGTAACTTAATT668TTCATTGACAACATTAAAATGCTTTTAATGTGCGTGATTGACTAT
Si_gnG.scaffold55720 dna:supercontig supercontig:GCA_000188075.1:Si_gnG.scaffold55720:1:761:1
position: 11-25
ATAGCATTTT11AATGTTGTCAATGAAAATTAAGTTACGTAACAAAAATTTAATGTA
Si_gnG.scaffold66717 dna:supercontig supercontig:GCA_000188075.1:Si_gnG.scaffold66717:1:1326:1
position: 25-39
GTGCTATCAGGGTAAAAGCATTTT25AATGTTGTCAATGAAAATTAAGTTACGTAACAAAAATTTAATGTA
Si_gnG.scaffold65444 dna:supercontig supercontig:GCA_000188075.1:Si_gnG.scaffold65444:1:1382:1
position: 990-1004
TAGTCAATCACGCACATTATAAAGCATTTT990AATGTTGTCAATGAAAATTAAGTTACGTAACAAAAATTTAATGTA
Si_gnG.scaffold00805 dna:supercontig supercontig:GCA_000188075.1:Si_gnG.scaffold00805:1:1534076:1
position: 116136-116150
AGAATTCTAACTTGAATACAAATTAAGCGT116136AATGTTGTCAATGAAAATTAAGTAATGAAAATTAATCTATCTGGA
Si_gnG.scaffold09348 dna:supercontig supercontig:GCA_000188075.1:Si_gnG.scaffold09348:1:3085638:1
position: 579861-579875
TCTAGTACTTTTGACATCCTTGATTATCAC579861AATGTTGTCAATGAATAAACTTACAAAAAATTACCCTGAAAATAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/Si_gnG/TTCATTGACAACATT
lang : ja | db : Si_gnG | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.76:28159/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.006 | search_minus_done; http://172.18.8.76:28159/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.092 | 0.003 | cgi_end;

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