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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-06-27 14:51:15, GGGenome : Rhesus pre-spliced RNA, RefSeq on T2T-MMU8v2.0, D3G 26.03 (Mar, 2026)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

XM_001084620.4|SYT1;695390|chr11:86057410:86651827:+|prespliced::chr11:86057410-86651827(+)
position: 244610-244624
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244610AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_015152348.3|SYT1;695390|chr11:86057410:86651827:+|prespliced::chr11:86057410-86651827(+)
position: 244610-244624
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244610AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XR_013410687.1|LOC705034;705034|chr19:51992125:52048778:+|prespliced::chr19:51992125-52048778(+)
position: 1115-1129
ACTCCCTTAGGAGAGCTGTAACATTATACT1115AATGTTGTCAATGAAAAGCTAAGACAGGCCAGGGGTGGTGGCTCA
XR_013410687.1|LOC705034;705034|chr19:51992125:52048778:+|prespliced::chr19:51992125-52048778(+)
position: 52616-52630
CTCCCTTAGGAGAGCCGTTAACATTATACT52616AATGTTGTCAATGAAAAAGCTAAGATAGGCAGGGCGTGGTGGCTC
XM_001100761.5|CYP2G2;704111|chr19:52184970:52205248:-|prespliced::chr19:52184970-52205248(-)
position: 2621-2635
TTCCCTTAGGAGAGCTGTTAACATTATACT2621AATGTTGTCAATGAAAAGCTAAGATAGGCCAGCATGGTGGCTCAC
XM_001100209.5|HESX1;704551|chr2:120756730:120785319:-|prespliced::chr2:120756730-120785319(-)
position: 25997-26011
ACTATGCTGCACTCCAAATACTATTGTGTT25997TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
XM_077993242.1|HESX1;704551|chr2:120756730:120785319:-|prespliced::chr2:120756730-120785319(-)
position: 25997-26011
ACTATGCTGCACTCCAAATACTATTGTGTT25997TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
XM_077993243.1|HESX1;704551|chr2:120756730:120785319:-|prespliced::chr2:120756730-120785319(-)
position: 25997-26011
ACTATGCTGCACTCCAAATACTATTGTGTT25997TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
XR_013417576.1|LOC144341009;144341009|chr5:157487319:157492927:+|prespliced::chr5:157487319-157492927(+)
position: 1835-1849
CAGAATATATTATCGCTTTGAACACAGATT1835TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
XM_015139652.3|F11;702117|chr5:194688745:194715844:+|prespliced::chr5:194688745-194715844(+)
position: 12201-12215
GCCTGAGCCACCATGCCCAGCTTGCTATTC12201TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XM_015139653.3|F11;702117|chr5:194688745:194715844:+|prespliced::chr5:194688745-194715844(+)
position: 12201-12215
GCCTGAGCCACCATGCCCAGCTTGCTATTC12201TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XM_077969621.1|COX10;718301|chr16:15168647:15726222:+|prespliced::chr16:15168647-15726222(+)
position: 444633-444647
GCCTCTGGGCCTATATTAGATGGGCCATGC444633TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
NM_001194644.2|COX10;718301|chr16:15586005:15726222:+|prespliced::chr16:15586005-15726222(+)
position: 27275-27289
GCCTCTGGGCCTATATTAGATGGGCCATGC27275TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://172.18.8.233:20081/en/T2T-MMU8v2.0_RefSeq_prespliced_d3g2603/AATGTTGTCAATGAA
lang : en | db : T2T-MMU8v2.0_RefSeq_prespliced_d3g2603 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.018 | 0.018 | search_start;
0.178 | 0.160 | search_plus_done; http://172.18.8.72:29034/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.195 | 0.017 | search_minus_done; http://172.18.8.72:29034/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.206 | 0.011 | cgi_end;

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