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許容するミスマッチ/ギャップの数: (検索する塩基配列の長さの25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2017-05-24 18:54:52, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr1:83462476-83462490
CTAATTAATGAATAGTAAGTATATTTTCTC83462476TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
chr2:161223115-161223129
ATTGCAGCAAAGAAGCACATTTATATTCTA161223115TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
chr3:15289790-15289804
ATTGTAATAGCCAGAAATTGGAAACATATA15289790TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
chr3:84619845-84619859
TTGGTTTTGTATATATTAAATAGTTGAAAC84619845TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA
chr4:16134651-16134665
AACGAAAGGCGTTTGAGGAAAGCCTGATAA16134651TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
chr4:63031140-63031154
TCTTCAAATATTTTACAGAGTTCAACTCTT63031140TTCATTGACAACATTATGACATTATGCTGATTGGATCCAGTGAGT
chr4:149833218-149833232
CAGAATATATTATCGCTTTAAACACAGATT149833218TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
chr4:166722150-166722164
AAAAACGTCTGATTTTGTGTAACACTCCTT166722150TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
chr6:62708216-62708230
CTATTTCAATCAACCATCTTGTAATCATAC62708216TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
chr7:3563673-3563687
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC3563673TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
chr8:31356145-31356159
GTATTTTTAAATTCATCGATATTTCCACTT31356145TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
chr11:24494030-24494044
TTGAGTTTCCTGGAACATAGATATGTCTTG24494030TTCATTGACAACATTCTAGCATTGAGGACAGTGAATAGAGAAAAG
chr13:84765547-84765561
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA84765547TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC
chr18:27151689-27151703
ATATTTATATATGTATATATTTCATATTAT27151689TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
chr19:41567266-41567280
AAGCCACCACACCCGGCCTATCTTAGCTTT41567266TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
chr2:197077860-197077874
AATGCCCCACATTTCATTAAGGGTGATGAC197077860AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
chr3:57234519-57234533
GCCTGTTTTTCATATGCATATGTAATAGGG57234519AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
chr3:97079322-97079336
AATTTGAATATTAATTTTAAAATTTATTCA97079322AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
chr5:9759503-9759517
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9759503AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG
chr7:34158561-34158575
TCTACAGATTTTGGATTTACCAGCCCCCAC34158561AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
chr7:78351404-78351418
AACTAACACCCATAAAAGGTATGACTCTTT78351404AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
chr12:79501294-79501308
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79501294AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
chr19:41398192-41398206
CTCCCTTAGGAGAGCTGTTAACATTATACT41398192AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/TTCATTGACAACATT
lang : ja | db : hg19 | k : 0 | strand : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.001 | 0.001 | search_start;
0.113 | 0.112 | search_plus_done; http://172.18.8.78:40023/match?q=TTCATTGACAACATT&k=0&offset=0&limit=50
0.137 | 0.024 | search_minus_done; http://172.18.8.78:40023/match?q=AATGTTGTCAATGAA&k=0&offset=0&limit=35
0.143 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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