GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-01 16:34:33, GGGenome : Xenopus tropicalis genome, XenBase/JGI 8.0

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chr04:
96548353-96548367
CCAATAGCTTTGGGAATGAGCAGTGTAAGC96548353AATGTTGTCAATGAAACAAAATTATACAGGCCAATAACTTATTAT
Chr01:
154015828-154015842
ATAGGGTTCAGTTATGACTGCAACTGTGCG154015828TTCATTGACAACATTTATCCAGGTTTCTTCTGTGCAAATCGCTCC
Chr02:
149270438-149270452
AGGGAGTGGTGTGTGGAACTGGTATTCCAG149270438TTCATTGACAACATTACCTTGAAATAAATGGGGTTTGGAGGCAGA
Chr07:
67222791-67222805
ACGGGCATCTGAAAATGTGAAAATACCACA67222791TTCATTGACAACATTGTATTGAGAAGTTTATAAAATAATGTGAAG
scaffold_61:
419397-419411
CACTCTCACAATATTCAATATTTTGGTTGC419397TTCATTGACAACATTATTCTTATATGGTCCGGTACCGATGAACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/Xentr8/AATGTTGTCAATGAA
lang : en | db : Xentr8 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.084 | 0.074 | search_plus_done; http://172.18.8.77:28226/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.005 | search_minus_done; http://172.18.8.77:28226/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=49
0.091 | 0.003 | cgi_end;

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