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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-03-29 11:26:30, GGGenome : Lancelet genome, JGI 1.0/braFlo1 (Mar, 2006)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chrUn:53572706-53572720
TGCTGGTGTAAACAAAATGTCCTACATGTA53572706AATGTTGTCAATGAAATCTAATAAAAAATGTAAATTAAGAAATTC
chrUn:133911774-133911788
ACGTATGTAATTTGTCAGCGATTCTGTTTT133911774AATGTTGTCAATGAATGGTTAGCAATGGGTAGCATGGTAGAACAT
chrUn:200618751-200618765
AATTCTTCTAGGATGTGTTTTATACTTTTA200618751AATGTTGTCAATGAAAAACAGACTTTCATCAAAGTTGTCATAAAT
chrUn:406363064-406363078
GAATACCTTGAGGGAAGGAAATGCCTAAGA406363064AATGTTGTCAATGAATATAGTGTTTATGATTTGCATTTTATTAAG
chrUn:646339252-646339266
GCACGATGTCTGCATCCCAGTTCACTGATG646339252AATGTTGTCAATGAAGGCCATATTAAGTTTTATGTTTTTTTACAA
chrUn:32047166-32047180
AGACATAAGAGAATACGATGATAAACTATT32047166TTCATTGACAACATTTGAATGATTTTCTTTAAAAAACAACGTTGC
chrUn:35973901-35973915
TGTTAGACCTTTATTCTGAATATTGCTACA35973901TTCATTGACAACATTTCTGCTTACAATATGTTACTGAGAAAGGCT
chrUn:44790084-44790098
TCATGCATAATGGCGGGGAGACTGAAATAT44790084TTCATTGACAACATTTTCTGGCTTCCTCATTTTAGGAAGATAAAC
chrUn:336867124-336867138
AAAATTTCAGTGACACTTTTTCATGAGTAA336867124TTCATTGACAACATTTAACATTTAACAATTGACAATGATTCAAAT
chrUn:343398172-343398186
ATCAATTTGTAAAAAAACATGAATATAGCC343398172TTCATTGACAACATTCATCAGTGAAAAAGGCAGCCATCGCGCAAT
chrUn:346092820-346092834
ATAAGACTTTGCAGAATCAGTGGATGCCTT346092820TTCATTGACAACATTGATTGGTGTTGGACAGTGAAANNNNNNNNN
chrUn:354650286-354650300
TGTTAAACCTTTCTTCTGAAGAGTGCTACA354650286TTCATTGACAACATTTCTGCCTACAATATGTTACTGAGAAAGGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/braFlo1/AATGTTGTCAATGAA
lang : ja | db : braFlo1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.085 | 0.076 | search_plus_done; http://172.18.8.76:28091/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.004 | search_minus_done; http://172.18.8.76:28091/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.091 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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