GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2021-01-18 19:50:30, GGGenome : Lancelet genome, JGI 1.0/braFlo1 (Mar, 2006)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chrUn:32047166-32047180
AGACATAAGAGAATACGATGATAAACTATT32047166TTCATTGACAACATTTGAATGATTTTCTTTAAAAAACAACGTTGC
chrUn:35973901-35973915
TGTTAGACCTTTATTCTGAATATTGCTACA35973901TTCATTGACAACATTTCTGCTTACAATATGTTACTGAGAAAGGCT
chrUn:44790084-44790098
TCATGCATAATGGCGGGGAGACTGAAATAT44790084TTCATTGACAACATTTTCTGGCTTCCTCATTTTAGGAAGATAAAC
chrUn:336867124-336867138
AAAATTTCAGTGACACTTTTTCATGAGTAA336867124TTCATTGACAACATTTAACATTTAACAATTGACAATGATTCAAAT
chrUn:343398172-343398186
ATCAATTTGTAAAAAAACATGAATATAGCC343398172TTCATTGACAACATTCATCAGTGAAAAAGGCAGCCATCGCGCAAT
chrUn:346092820-346092834
ATAAGACTTTGCAGAATCAGTGGATGCCTT346092820TTCATTGACAACATTGATTGGTGTTGGACAGTGAAANNNNNNNNN
chrUn:354650286-354650300
TGTTAAACCTTTCTTCTGAAGAGTGCTACA354650286TTCATTGACAACATTTCTGCCTACAATATGTTACTGAGAAAGGCT
chrUn:53572706-53572720
TGCTGGTGTAAACAAAATGTCCTACATGTA53572706AATGTTGTCAATGAAATCTAATAAAAAATGTAAATTAAGAAATTC
chrUn:133911774-133911788
ACGTATGTAATTTGTCAGCGATTCTGTTTT133911774AATGTTGTCAATGAATGGTTAGCAATGGGTAGCATGGTAGAACAT
chrUn:200618751-200618765
AATTCTTCTAGGATGTGTTTTATACTTTTA200618751AATGTTGTCAATGAAAAACAGACTTTCATCAAAGTTGTCATAAAT
chrUn:406363064-406363078
GAATACCTTGAGGGAAGGAAATGCCTAAGA406363064AATGTTGTCAATGAATATAGTGTTTATGATTTGCATTTTATTAAG
chrUn:646339252-646339266
GCACGATGTCTGCATCCCAGTTCACTGATG646339252AATGTTGTCAATGAAGGCCATATTAAGTTTTATGTTTTTTTACAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/braFlo1/TTCATTGACAACATT
lang : ja | db : braFlo1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.007 | 0.007 | search_start;
0.116 | 0.109 | search_plus_done; http://172.18.8.76:28091/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.127 | 0.011 | search_minus_done; http://172.18.8.76:28091/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.128 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).