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データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-05-02 05:32:05, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

chr1:9542528-9542542
ATTTATATTTTTTTAATATATTTTTTCAAA9542528AGGTTATTTTGACCTAAAGGCAGGATTTACCGAAAGTACATGTTC
chr1:14422757-14422771
AGTCCCATAAAAGTGGATTCAGAGAGAGGC14422757AGGACATTTTGACCTGCAACCAGGGGTATAAAGGGTAATAATTAC
chr1:32906915-32906929
GCAGATCTCATGGAGAGTACAAGAACATGA32906915AGGTTATTTTGACCTAAGGGCAGGATTTATGGGAAGAATGTAATC
chr1:32917237-32917251
TGAGGGATCCACCAAACTTCAATAACGTGA32917237AGGTTATTTTGACCTAAGGGAAGGATTTATGGGAAGAATGTAATC
chr1:46910709-46910723
GAGCTGAGGAAGCCTGGAATTCTGAGATCT46910709AGGTCATTTTTACCTTAATATAGATTGGGAAAGGGATGTTTGGAC
chr1:49032773-49032786
ACAGCCACTTACTGTCTGTTTACCTTCATC49032773AGGTCATTTT-ACCTCATTGAGCCTTTGTTTTCTAATGTATATAA
chr1:49196551-49196564
CTCATTTAGAAAACTCAGACACTCCACAAA49196551AGGTCA-TTTGACCTTAATAGGTTTAACTGTCATTCTGGAGCTTG
chr1:54548546-54548559
CGTATGGTATGATCAAATTGTGTTTGAAAA54548546AGGTCATTTTG-CCTTCAGTAGAGAGGATGAATTGGAGAGGGCAG
chr1:67854511-67854524
TTCTTCAAATGCTGTGTAAAGTAAGAGAAG67854511AGGTC-TTTTGACCTCTAACTCAAAGTCATTCTACCAGCCATTGA
chr1:70172035-70172048
GTCCTGTCCTCAGTTACTCTTGAGTGTTCC70172035A-GTCATTTTGACCTCAGAAACAGAGTCTAGCATTCGTCACTTAC
chr1:111714127-111714141
GATTGGCCTAAAGTTTATTACGGGCGTTGA111714127AGGTTATTTTGACCTCAGACTGTCAAATTTATAGCTTCCACATCA
chr1:144282640-144282653
TACTCTAAAAAATAAGGTCTATTTTCTTAA144282640AGGTCATTTTG-CCTCCATAGTGGGAAAAAAAATAGCAGTTGACT
chr1:144462883-144462896
TACTCTAAAAAATAAGGTCTATTTTCTTAA144462883AGGTCATTTTG-CCTCCATAGTGGGAAAAAAAATAGCAGTTGACT
chr1:155788382-155788396
CAAAAAAAGTGATGTGATTGCCAAAAACAA155788382AGGTCAATTTGACCTTAGGCTACATTAGGAGAAATATGTAATCTG
chr1:176956504-176956519
AATAGAACTTTATTTACAAAAACAGGTGAC176956504AGGTCATATTTGACCTGAGGGCAGTAGTTAGCAGAACCCTGATCTA
chr1:178409153-178409167
TCCATCCATCCATCCATCCATCCTAATTCC178409153AGGACATTTTGACCTAAATGTCTTATTTATTTTTGAAATCCCCTG
chr1:179422622-179422637
TGACCTGGATGTGACACGTGGAGTCAAAGA179422622AGGTCATTTTGGACCTTTAAGATTTGACTGCTGTCCAGGCACAGTG
chr1:188636468-188636481
AGGACTCAGCCATTTTTACAAAGCTTTAAA188636468AGGTCATTTTGA-CTCTGAGCCTTTAATTTGGGGTCCAAATCAAA
chr1:189689037-189689051
GGGAATGCTAAGTGTATTTTTTGTCATTGG189689037AGGTCATTGTGACCTGAATGATTTCCCAATTTTCCATAGGACAGT
chr1:193889138-193889152
CACACTTGTAGGACATCAGTCTTGCTAAAT193889138AGGTCATTTTGACCCAGTATATTGTGGCTGAATCTGACATAACAT
chr1:194961563-194961576
CATATTTATTTCTAATTCTTGTCACATATA194961563AGGTCATTTTGA-CTGGGAGATTTTTTTTACCTCTCCCTATAAAC
chr1:208049028-208049041
TCTTCTTTCCCCAAAGACTCCCAGGACTTA208049028AGGTCATTTTG-CCTGGAAGACTTTAACTAAAGGTCAGGGCAACA
chr1:229828151-229828164
TTTTTTTCTTGTAAGGTTTGTTGGGAAATG229828151AGGT-ATTTTGACCTGCTTGACTGATTCACCTACTAAAAGGATTA
chr1:235538774-235538787
AGAGAACTTAACTAGGCAGCAGCTGACTGC235538774AGGTCATTTTGA-CTGGATACTAAAATGGGGCTGGGGGTGGGGGA
chr1:237930284-237930297
ACCTACAGAAATTCTGTAACTTAGAAATTT237930284AGGTCA-TTTGACCTAAGGCTTCACATTTATTTCTTTTGTGCTTT
chr1:246470023-246470037
AGAATTAATTGAAGCAAACTCGCTCAGATA246470023AGATCATTTTGACCTCTGTTCTTCACGCTAGACATTTTCATTACA
chr1:247197700-247197713
CAATCTTGCTGGTGTTAGCAACATACAGTA247197700AGGTCATTTTGA-CTAAGGTCATCTAGGTTGCAAGGTTAGGCCTT
chr2:2134394-2134408
GCTGCTATTTTAAAAAAAGTGAGATAGGGC2134394AGGTCATTTTGACCCAGAGAGGCGTCTGTATACATAATGGAGTAA
chr2:11399644-11399657
GCTCTGCCACTTAATTCTTTCTCCTTGGGC11399644AGGTCA-TTTGACCTCTCTGAGACTCAGTTTTGCAATCTATAAAG
chr2:12762964-12762978
TTAATGCAAACCCAAATGCTTAACAAGTGA12762964AGGTCATTTTGTCCTCAATTCATTTTTGAAATTATTTTATTTTAT
chr2:24290518-24290533
TGTATTCCAATATGTATCAAAGTTTCAAGC24290518AGGTCATTTTGAACCTCAAATAAGAAATCACAATATTTAGTATTAA
chr2:29830410-29830424
CTCACCACTCCCCCGAAATGGCTCTTGTCA29830410AGGTCATTATGACCTCCAGATAGCTAAAACCAATAGTCAAGGCTC
chr2:34100445-34100459
CCAAGCTTGGCTATGGCATCATCCTCTCTT34100445AGGTCATTTTGACTTTAATTTCCGTAATGACTAATTATATTGGGC
chr2:43993484-43993498
TATTGCCCACATTTCACTGTATTTGGTGCT43993484GGGTCATTTTGACCTTGCTTTGTTAATAATATCTTTAAAAACAAA
chr2:46970705-46970719
GCTTCTGTCATGCAGCCTGTTTTCTCAGCA46970705AGGTCATTATGACCTGTATTTTGTGCTGACCTCCTATCTCATCCT
chr2:49026627-49026641
TAAAAAGCCCAGTTTATAGTTAGCCTAAGC49026627AGGTCATTTTTACCTCATAGAGCCCTACTTAAGCAATGGAATCAA
chr2:61832126-61832140
ATGTTACCTGGATACCTCTTGGAGAACCTG61832126AGGTCATTTTGGCCTGATGCATTAATATTTAACAAGCCTGTGATT
chr2:67118215-67118228
AGCTCTATTATAATTTTAAAGAAATTAAGG67118215AGGTCATTTTG-CCTATTAGAATGCCTGGAATTAAGAAGCTTTCT
chr2:67392951-67392965
ACATCTTTTAAGTGTAGGCTCCCATTTGAA67392951AGGTCATGTTGACCTGCTGTGATCATTTACATGGAACACCATGGT
chr2:67880114-67880129
CACCCTGATAGTTTTCTCATCTAATACATC67880114AGGCTCATTTTGACCTAGGTACTTGCCACTTGCTCTTCACTCTGCA
chr2:69313917-69313931
CCAGACATTCTCTTAAGTGCTTTACTGCCA69313917AGGTCATTTTGACCACTCTTCTTGGTGCCTTATTTTCATAAGGTG
chr2:76479516-76479531
CATTATAGTTCTATTATTTTAGAAGTTAAA76479516AGGTACATTTTGACCTAACAGCATTCAAAGTTAACTAACATCTTTC
chr2:77877254-77877268
CAAGTGACTGTAAGATGGTGTCAGTTAAGA77877254AGGTCATTTTGAGCTGTTGAAAGGCTTGCTCTTTTATGGTTATGG
chr2:78043940-78043954
TCTCATTTTCATGCTGAGTCACATCAGCAA78043940AGGTCATTATGACCTTGGGAACGACCTCTAACCCAGAACCAAAGC
chr2:78509666-78509681
TTAACTGGATGTGAGACATGAAATCAAAGG78509666AGGTCATTTTGCACCTTTAAGATTTGACTGCCACATTGGATTTTAG
chr2:82534327-82534341
ATCTACATTTTTTATTTCAACTTCCCAGAG82534327AGGTCATTTTGAACTTGAGTGCTTGGTCAAGTTGCCCTGTACTAG
chr2:84618945-84618958
CCCTTATTTCTGATGCCAATCACAAGCCCC84618945AGGTCATTTT-ACCTGTGCTTCTGTCTGATATGGTTTGGCTGTGT
chr2:88480454-88480468
CCTGACTCTGACACTTAACAGGCTTTGGAC88480454AGGTCATTTAGACCTCTTGGAACATTCATTTCCTCTTCCAAAAAT
chr2:99132762-99132776
ATGTCCCCAAATAACTATGAAGTGCTTCTA99132762AGGTCTTTTTGACCTAAAAGTTTCCGTGACCTGTGAACTCTCTCA
chr2:100494698-100494712
GAGCTTTGAGTTGTGAAGAAAAATCCAGGC100494698AGGTCAATTTGACCTTGGAACAGAATTCTTTTGGTTGAATGTTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/hg19/1/AGGTCATTTTGACCT
lang : ja | db : hg19 | k : 1 | strand : | nogap : | query_string : AGGTCATTTTGACCT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.090 | 0.080 | search_plus_done; http://172.18.8.78:28018/match?q=AGGTCATTTTGACCT&k=1&no_gap=0&offset=0&limit=50
0.104 | 0.015 | search_minus_done; http://172.18.8.78:28018/match?q=AGGTCAAAATGACCT&k=1&no_gap=0&offset=0&limit=0
0.104 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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