GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-27 20:43:01, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2:11653035-11653049
ATGGCTTAAGACTTATAGACAAAGATAATC11653035AGGTCAAAATGACCTTCTTTCAGTTGTTGGGGCAGTGAGGGTGGA
chr2:97281269-97281283
AATATCTGCGAATTCCATGCTACCCACAAA97281269AGGTCAAAATGACCTAGGGGAAAGGAAAAATGTTTAAATATTAGA
chr2:190957049-190957063
GAGAATGTACTTACTGTAAATCCTGCCCTT190957049AGGTCAAAATGACCTTGATATTATACATCAATTGTCCTACACATT
chr2:214933660-214933674
AAGAATAATACTTTATTCCCTAAGAAGTAA214933660AGGTCAAAATGACCTCAGAAATTCGTTGCATTATATATACTCTAA
chr2:222292932-222292946
TGAGGAAGATGTAGGCTCTGAGCACCGACA222292932AGGTCAAAATGACCTTACAATGAAAATATCTTCACTCGATGTCAA
chr6:47314782-47314796
GAGCATGTACTTGCCAAAAATCCTGCCCAT47314782AGGTCAAAATGACCTTGACTATAAATCCTGCCCCTAGTCAAATTC
chr7:57575357-57575371
AGAGAAAAAAAGCAGTCAGGAATGACGTCA57575357AGGTCAAAATGACCTAAACATTATTATCCTCCTGAAAGCAAGTTG
chr12:34436799-34436813
GGTATCAAGAAATATTCAGTTTTTCACTAT34436799AGGTCAAAATGACCTCCAAAATGTAGCTTCGTGGATCCTACAAAA
chr12:43141513-43141527
GTTCATGTTCTTACTGTAAATCCTGCCCTT43141513AGGTCAAAATGACCTTGATGTTATTGTACTTAATATAAATCCTGC
chr12:105408603-105408617
AGAAAGGCGACAGCTGGTTTTCCCTTCCAA105408603AGGTCAAAATGACCTCAGGCTGGAGTTGCCTTTCTGCCCTATTCT
chr14:38993996-38994010
CAAGGGAAGAGATTCACACTGAAAATATTT38993996AGGTCAAAATGACCTGTCCTTTCCTAGTCTGATTCAACTAGCACA
chr5:132825957-132825971
TGAAATTAATAACAAACTGATCTACTTCTT132825957AGGTCATTTTGACCTTTGAGTGAATTAAAACATAATTCACATAGA
chr8:133703552-133703566
GACCATTAGAAACTCTTTCAGTTGGTTTCT133703552AGGTCATTTTGACCTATACCTGTCATTATGAGTTTGGTTATTTGT
chr10:60273927-60273941
CGAGTGTTGGAGTGAACGTCAAAACGTCCA60273927AGGTCATTTTGACCTTTCTTAAAACAGATAATTACTAGCCTACCT
chr11:131579940-131579954
CTGAGAACACACACTGGATTAGCAATGCAG131579940AGGTCATTTTGACCTTGACAAGAACAATGTGAGTGCACTGGTGGG
chr13:46934030-46934044
TTATTTCCAGACTTCAAATTTACTGTAAGT46934030AGGTCATTTTGACCTGGAATGCATTTATGAATAGCAGAAGCCTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/en/hg19/AGGTCAAAATGACCT
lang : en | db : hg19 | k : 0 | strand : | nogap : | query_string : AGGTCAAAATGACCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.085 | 0.076 | search_plus_done; http://172.18.8.78:28018/match?q=AGGTCAAAATGACCT&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.006 | search_minus_done; http://172.18.8.78:28018/match?q=AGGTCATTTTGACCT&k=0&no_gap=0&offset=0&limit=39
0.092 | 0.001 | cgi_end;

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