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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-03-29 17:09:51, GGGenome : Rice genome, Os-Nipponbare-Reference-IRGSP-1.0 (Oct, 2011)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr03:9682664-9682678
TGATCCCAATAGTTGTTTATTTTTGGACTC9682664TTCATTGACAACATTGCCACTTTGATGACTGTTCTGACATGAATG
chr07:12705943-12705957
CGTGTGCCTCCTGGATGCACCAATCGGCTG12705943TTCATTGACAACATTTTGTTGAAGGACCTTGGCAACATCTTTTTG
chr07:24274176-24274190
AGATCTATCTAATTTAGGTGTAGTGCTCTC24274176TTCATTGACAACATTTTTCACTTCCTGCGTTAGGTTTCCATTATC
chr09:16180672-16180686
CTTTCAAATGATGGTCAAACTAATTATAAA16180672TTCATTGACAACATTAACTAAACGAGTGAAGAGTGAAGAGAAGAT
chr10:2282429-2282443
ACAAATATATTCACAATATTGATTCACAGG2282429TTCATTGACAACATTGAGTCACATACTCATTCACAATATTGATTC
chr02:31045654-31045668
GAGCAAGCCATGAATCGGTACAAACAAGAG31045654AATGTTGTCAATGAACAGGTCTTATCCACACGTCGGACATCAGGA
chr05:7954307-7954321
TATGATTGAGCACCCCTACCTACTTTGCAA7954307AATGTTGTCAATGAACTGTTTGTTCGCTACATAAATGTTCAATGA
chr05:27511242-27511256
TCTTGCATAAATTACCTGAGTGAAACGGAA27511242AATGTTGTCAATGAACAAAAGCACATCTTGTCCTTCGGCATCACG
chr10:4470091-4470105
CCTCCATAAGCAATGCCTCTTTTCCCTATC4470091AATGTTGTCAATGAATGTTTTAGGCAGCTGCAAAGTTGTCACACC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/rice/TTCATTGACAACATT
lang : ja | db : rice | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.72:28219/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.006 | search_minus_done; http://172.18.8.72:28219/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.092 | 0.002 | cgi_end;

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