# [ GGGenome | 2026-06-27 08:56:33 ] # database: Rabbit pre-spliced RNA, RefSeq on mOryCun1.1, D3G 26.03 (Mar, 2026) # query: AATGTTGTCAATGAA # count: 12 # query: TTCATTGACAACATT # count: 14 # name strand start end snippet snippet_pos snippet_end query sbjct align edit match mis del ins XM_008257472.4|C1H9orf153;100342003|chr1:144313954:144355398:+|prespliced::chr1:144313954-144355398(+) + 40676 40690 GGCGCAGAGGTCACTCTGAGGAGTTGAATGTTAACTGCATAGAGACCTGGGAACAAAACAAGTTTGGAGAAGAAACACATTGGGAATCTTGGAAGTGGAAAATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTACGCTCTCTGCCTGTGAGGAGGACGGACTAATAAGCTGGGGAATCAGACCGAGAAGCCTCGAGATCGCAGC 40576 40790 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XM_008257487.4|C1H9orf153;100342003|chr1:144325237:144355398:+|prespliced::chr1:144325237-144355398(+) + 29393 29407 GGCGCAGAGGTCACTCTGAGGAGTTGAATGTTAACTGCATAGAGACCTGGGAACAAAACAAGTTTGGAGAAGAAACACATTGGGAATCTTGGAAGTGGAAAATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTACGCTCTCTGCCTGTGAGGAGGACGGACTAATAAGCTGGGGAATCAGACCGAGAAGCCTCGAGATCGCAGC 29293 29507 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XM_051847112.2|C1H9orf153;100342003|chr1:144325237:144355398:+|prespliced::chr1:144325237-144355398(+) + 29393 29407 GGCGCAGAGGTCACTCTGAGGAGTTGAATGTTAACTGCATAGAGACCTGGGAACAAAACAAGTTTGGAGAAGAAACACATTGGGAATCTTGGAAGTGGAAAATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTACGCTCTCTGCCTGTGAGGAGGACGGACTAATAAGCTGGGGAATCAGACCGAGAAGCCTCGAGATCGCAGC 29293 29507 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XM_008257491.4|C1H9orf153;100342003|chr1:144328257:144355398:+|prespliced::chr1:144328257-144355398(+) + 26373 26387 GGCGCAGAGGTCACTCTGAGGAGTTGAATGTTAACTGCATAGAGACCTGGGAACAAAACAAGTTTGGAGAAGAAACACATTGGGAATCTTGGAAGTGGAAAATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTACGCTCTCTGCCTGTGAGGAGGACGGACTAATAAGCTGGGGAATCAGACCGAGAAGCCTCGAGATCGCAGC 26273 26487 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XM_051847101.2|C1H9orf153;100342003|chr1:144328257:144355398:+|prespliced::chr1:144328257-144355398(+) + 26373 26387 GGCGCAGAGGTCACTCTGAGGAGTTGAATGTTAACTGCATAGAGACCTGGGAACAAAACAAGTTTGGAGAAGAAACACATTGGGAATCTTGGAAGTGGAAAATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTACGCTCTCTGCCTGTGAGGAGGACGGACTAATAAGCTGGGGAATCAGACCGAGAAGCCTCGAGATCGCAGC 26273 26487 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XM_051847092.2|C1H9orf153;100342003|chr1:144348787:144355398:+|prespliced::chr1:144348787-144355398(+) + 5843 5857 GGCGCAGAGGTCACTCTGAGGAGTTGAATGTTAACTGCATAGAGACCTGGGAACAAAACAAGTTTGGAGAAGAAACACATTGGGAATCTTGGAAGTGGAAAATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTACGCTCTCTGCCTGTGAGGAGGACGGACTAATAAGCTGGGGAATCAGACCGAGAAGCCTCGAGATCGCAGC 5743 5957 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XR_011381533.1|LOC103350916;103350916|chr13:59575282:59809668:-|prespliced::chr13:59575282-59809668(-) + 182097 182111 TGGTTTATTCATGTGAAAACAACATTCTTCACCTAAAAAGAGACAAAGTCATCCTCTCTCCACTGTGAGGGGGTATAGTGCTCAGTGGTTCAGGAGAACTAATGTTGTCAATGAATCCTCCTGATCCTGGAGGTGAGATAGTTGCTCTGCTAGGTTATTTATGTTTTCTTTGAGACTGAGAGAGAAACCTTCAATTTTATTTGCCTTGTCCACTG 181997 182211 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XR_011381534.1|LOC103350916;103350916|chr13:59575282:59809672:-|prespliced::chr13:59575282-59809672(-) + 182101 182115 TGGTTTATTCATGTGAAAACAACATTCTTCACCTAAAAAGAGACAAAGTCATCCTCTCTCCACTGTGAGGGGGTATAGTGCTCAGTGGTTCAGGAGAACTAATGTTGTCAATGAATCCTCCTGATCCTGGAGGTGAGATAGTTGCTCTGCTAGGTTATTTATGTTTTCTTTGAGACTGAGAGAGAAACCTTCAATTTTATTTGCCTTGTCCACTG 182001 182215 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XM_070060743.1|LRRC3C;100356654|chr17:22457964:22475376:-|prespliced::chr17:22457964-22475376(-) + 5145 5159 ATCTCTCTTTCTCTCTCTGTGTAACTCTGACTTCCAAATAAATAAATCTTTTTTAAAAATTATTTTAAAATCTCCTTTATCTTTTACAAGTTTATAGTAAAATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAATAATCTGGCTGGAGCTTTGTGGCTATAAAAGAAACAAGATGGGCCCTGAGGTGGTATATAACGCAGCTGTG 5045 5259 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XM_070060744.1|LRRC3C;100356654|chr17:22457964:22475437:-|prespliced::chr17:22457964-22475437(-) + 5206 5220 ATCTCTCTTTCTCTCTCTGTGTAACTCTGACTTCCAAATAAATAAATCTTTTTTAAAAATTATTTTAAAATCTCCTTTATCTTTTACAAGTTTATAGTAAAATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAATAATCTGGCTGGAGCTTTGTGGCTATAAAAGAAACAAGATGGGCCCTGAGGTGGTATATAACGCAGCTGTG 5106 5320 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XM_051825651.2|LRRC3C;100356654|chr17:22457964:22475625:-|prespliced::chr17:22457964-22475625(-) + 5394 5408 ATCTCTCTTTCTCTCTCTGTGTAACTCTGACTTCCAAATAAATAAATCTTTTTTAAAAATTATTTTAAAATCTCCTTTATCTTTTACAAGTTTATAGTAAAATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAATAATCTGGCTGGAGCTTTGTGGCTATAAAAGAAACAAGATGGGCCCTGAGGTGGTATATAACGCAGCTGTG 5294 5508 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XM_017349189.3|LRRC3C;100356654|chr17:22457964:22475641:-|prespliced::chr17:22457964-22475641(-) + 5410 5424 ATCTCTCTTTCTCTCTCTGTGTAACTCTGACTTCCAAATAAATAAATCTTTTTTAAAAATTATTTTAAAATCTCCTTTATCTTTTACAAGTTTATAGTAAAATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAATAATCTGGCTGGAGCTTTGTGGCTATAAAAGAAACAAGATGGGCCCTGAGGTGGTATATAACGCAGCTGTG 5310 5524 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 XR_011387597.1|LOC138849175;138849175|chr3:99935538:100219137:+|prespliced::chr3:99935538-100219137(+) - 89543 89557 TAAAACCCCAAGTATAAATATGAGGGGAGCATATCAGAAAAAGGTCAAGATTAAGTAAAACAAAATCAGAGCTTCAGGTGCTTCATTTCAATCTATTTTTTTCATTGACAACATTTATTAGATTTGCATGTGATTTTTGTTGAATGAGCACTACTATAATAGAAATTAGCATTTAAGACCATGCCCCAGTACTGCCAGTGCCACAAGAACCATCT 89443 89657 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_070048642.1|PCCA;100357836|chr9:12180948:12619667:-|prespliced::chr9:12180948-12619667(-) - 25514 25528 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25414 25628 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_008260152.4|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-) - 25665 25679 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25565 25779 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_051850465.2|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-) - 25665 25679 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25565 25779 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_051850466.2|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-) - 25665 25679 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25565 25779 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_051850468.2|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-) - 25665 25679 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25565 25779 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_051850469.2|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-) - 25665 25679 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25565 25779 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_051850470.2|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-) - 25665 25679 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25565 25779 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_070048637.1|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-) - 25665 25679 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25565 25779 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_051850471.2|PCCA;100357836|chr9:12249025:12619818:-|prespliced::chr9:12249025-12619818(-) - 25665 25679 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25565 25779 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_051850473.2|PCCA;100357836|chr9:12249025:12619818:-|prespliced::chr9:12249025-12619818(-) - 25665 25679 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25565 25779 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_070048638.1|PCCA;100357836|chr9:12249025:12619818:-|prespliced::chr9:12249025-12619818(-) - 25665 25679 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25565 25779 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_070048640.1|PCCA;100357836|chr9:12249025:12619818:-|prespliced::chr9:12249025-12619818(-) - 25665 25679 TCCAGAGAGCATGGGCGTCCTACAAGTAGTTCAGCCATTTTTTTCTTCCAAGAAACACTGTTAGTCTTTCTCATTAGCATAATAGGTATCAGAAAAGGTTTTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGTTATCTTCGAGAACTCAGCCCTTGTGTTAACACACTAGTATAACAATCAATGTTTGACCTTAGTTTTTTTT 25565 25779 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 XM_002713403.5|HESX1;100008708|chr10:92700426:92703268:+|prespliced::chr10:92700426-92703268(+) - 88 102 ATCCAGGCACTTGGAAGATAATTACACTCAGTGTTAATAACACTGCCAGCCTTTTCCAGAATGCTACACTCCAAATACTATTGTGTTTTCATTGACAACATTCACTATTACATATGCATATGAACACCAGTCATTTTCATCAGAATTGCTGTAATAGCATTAAGAGATTATTATTTTTTCCAATTTCCTTGGAAGAAAATTC 1 202 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0