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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-04-28 13:06:00, GGGenome : Chinese pangolin genome, M_pentadactyla-1.1.1/manPen1 (Aug, 2014)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

KN005784:157736-157750
CTGGAAAAGGCCTTTGGAAACAGGCCTGAG157736TTCATTGACAACATTGTTATTTGCAATCTGTTTGGTCTTGAATAA
KN007888:104117-104131
TTCCTTGGCTGTTTTGAATCTACTAATAAG104117TTCATTGACAACATTCTTTATTTCTGTTAGTGTGATTTTTATTTC
KN009195:107917-107931
TTGATCAGATAATGTTCTAAAATACCAGAA107917TTCATTGACAACATTTCAAAATCTGAAGATTTCACATTAAAAAAA
KN009342:43768-43782
TTGAGAAAGAGCTAAAGGGAAACTAAGACT43768TTCATTGACAACATTTCAGAATGACAATCTGATTCATGGTGACTT
KN012629:83732-83746
TATACTAGTTTCAAGTATTCAACATAGTGA83732TTCATTGACAACATTCTCTATGCTGTACTTTCATCCCCATGACTA
KN015124:11239-11253
GGCACAATCATGTGAGATTACTGATGTCAA11239TTCATTGACAACATTCCTAAAACGTTGAAAACATGTATGATAAGT
KN027537:6082-6096
AACTTATAATGTTGATGGAAGCAGCCCATC6082TTCATTGACAACATTCTTCCATCCCAAACTTAACTTACAGTTTTT
KN006821:140348-140362
TTTGGCTTAATATTAAATGGATGCCCACAG140348AATGTTGTCAATGAAAATCTGTGTTTAAAGTGATAATATATTCTA
KN008034:53809-53823
GAACAGTGGAAACGAGCTATGGATTATTTA53809AATGTTGTCAATGAACTCAATTACATGACTCAGATTGTTATCATG
KN008710:19792-19806
TCTGTGGTGTGCATAAGCTGGTACTTCAGA19792AATGTTGTCAATGAAAATATCTTACAATCAAAAGTTCTCCATACT
KN011856:42671-42685
GTAGAGCGTGAAAAACTTCCTGGCCAGAAC42671AATGTTGTCAATGAAGCCACAACTAGCCAGCTTCACCCTTATGAT
KN012004:25110-25124
GGGCCCAGAGGTATCAACTGTCACATAATA25110AATGTTGTCAATGAATTCATTGTCAAATTCATGTCAAAGAAACTC
KN012104:35645-35659
CCTTCTTGCCTTTGTCCTTCCCTTCCAGTC35645AATGTTGTCAATGAAGTCTTATCTTCTTCTTCAGTTCTTACCAAT
KN015487:26479-26493
ACACTTAAGCAATCATCCTGGACATGAAGC26479AATGTTGTCAATGAAAGGCAGCACTTAAGATTCAGGTGTATGAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/manPen1/TTCATTGACAACATT
lang : ja | db : manPen1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.082 | 0.074 | search_plus_done; http://172.18.8.78:28757/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.005 | search_minus_done; http://172.18.8.78:28757/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.089 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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