GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-03-30 00:39:12, GGGenome : Microbat genome, Broad Institute Myoluc2.0/myoLuc2 (Jul, 2010)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

GL429767:63197321-63197335
ATCATAAGGGTGAAGTTGGCTAGCTGTGGC63197321TTCATTGACAACATTGTTTTGGCCAGGAAGTTTTTCACGCTCTAC
GL429772:9503777-9503791
TAAATATTCATCCATTCGCTTCTTTGTTTA9503777TTCATTGACAACATTTCGTGAGCATCTGCTATCGGCAGGCCCCGG
GL429826:5174857-5174871
CCAGAGCCCTTGCTCCTGTCCTGAATTAGG5174857TTCATTGACAACATTCTTCTCACCACATCCCTTTTCCCCAAACTT
GL429905:3170068-3170082
CTTTTGAAAAATCTCTAAAATGACATGTTA3170068TTCATTGACAACATTACTTGAAGGAAAAATAAATAGGAGGACATA
GL429905:3181773-3181787
CTTTTGATAAATATCAAAAATGACATGCTA3181773TTCATTGACAACATTACTTGAAGGAAAAATAAATAGGAGGACATA
GL430000:1294673-1294687
CTTTTCATTATTCTTGATGGCTATTTTATA1294673TTCATTGACAACATTTCAGAAATTACATATATTTTTAATTTTAAA
GL430034:1579932-1579946
GTTTTGTTTAGACATGTGTCATAGTTTTAT1579932TTCATTGACAACATTTTCTAAGACACCCAAACTCTGAACAGCATG
GL430294:478446-478460
AATTTTATCTTCAGTGTCGAACTTTTTAAC478446TTCATTGACAACATTCACCGTAATGTCAGATGTTTTCCCTTCAAC
GL430328:385455-385469
AATATTCATAGGGTTTTAAAAACATGTAAG385455TTCATTGACAACATTAACAGGGTGGGTTATTGCGCCGAAAGTCCA
GL430338:34263-34277
GAACAAACCAACTCAATAAACCAATGTTTA34263TTCATTGACAACATTCCAGTAACACGTGACACAGTAAAAAATGTT
GL432496:14019-14033
CTTTTCATTATTCTTGATGGCTATTTTATA14019TTCATTGACAACATTTCAGAAATTACATATATTTTTAATTTTAAA
AAPE02065229:4336-4350
TTAATGACAGGAAAGTAGCAAACCATGTTA4336TTCATTGACAACATTTTCAGCAAAATTTATAAAATGACATGAGCC
AAPE02069208:2682-2696
AATTTTATCTTCAGTGTTGAACTTTTTAAC2682TTCATTGACAACATTCACCGTAATGTCAGATGTTTTCCCTTCAAC
GL429782:11736752-11736766
CAGAAAATAGGGTAAGTTTCAGAAAGTAAA11736752AATGTTGTCAATGAAGGAGTACCTTCAGGATGACCCACTGGAGGG
GL429783:10430285-10430299
GCAAACTGCACCCCACCAAAAAAAAAAAAA10430285AATGTTGTCAATGAAGAATGTAATCACAAATAGTTTCATAGATAG
GL429801:5486580-5486594
TGAATGTTGAAATCACTATGATTTGGAAGA5486580AATGTTGTCAATGAAAAGGACAGCGAGTCAGAAGGTAAAATCTTT
GL429850:4205261-4205275
TCCTGTTTTTCATATGCATATGTAATAGTA4205261AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATACT
GL429916:379344-379358
GGCTCGTGTCATTTTATAAATTTTGCTGAA379344AATGTTGTCAATGAATAACATGGTTTGCTATTTTTCTGTCATTAA
GL429921:1914285-1914299
TTCCTGGACGGGAATCTTTCCAGGAGCGCG1914285AATGTTGTCAATGAAGCACATTGAGGTGCTCTGTGTGTATGTGCA
GL430258:345053-345067
CCAGGAATATGGATGTGATACCAAGATTTG345053AATGTTGTCAATGAATGTAGTTAAGATACACAACTGGAACTTTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/myoLuc2/TTCATTGACAACATT
lang : ja | db : myoLuc2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.114 | 0.105 | search_plus_done; http://172.18.8.78:28043/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.121 | 0.007 | search_minus_done; http://172.18.8.78:28043/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=37
0.122 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).