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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-04 23:43:35, GGGenome : RefSeq complete RNA release 223 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Agaricus bisporus var. bisporus H97 ATP2 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase (AGABI2DRAFT_190409), mRNA
XM_006457965.1:1000-1014
CGTGATGAAGAAGGTCAGGATGTGTTGCTC1000TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
PREDICTED: Pogona vitticeps ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide (ATP5B), mRNA
XM_020784638.1:960-974
AGAGACCAAGAGGGGCAGGATGTATTGCTT960TTCATTGACAACATTTTCCGTTTCACACAGGCTGGGTCTGAGGTG
PREDICTED: Odocoileus virginianus texanus dynein heavy chain 5, axonemal-like (LOC110141408), mRNA
XM_020900314.1:451-465
ATCATCAGGGTGAAGCTGGCCAGTTGTGGC451TTCATTGACAACATTGTTTTGGCCAGGAAGTTTTTCACACTCTAC
PREDICTED: Drosophila serrata uncharacterized LOC110182939 (LOC110182939), ncRNA
XR_002319591.1:293-307
ACTAAGCAATACCGGCTAATATCGCTCCGT293TTCATTGACAACATTTAGATTTTCCTGTGGAAAACATTTCCCATC
PREDICTED: Drosophila serrata plexin-A4 (LOC110185457), mRNA
XM_020954300.1:6810-6824
CGTGATCAGGAGGGACAGGATGTTCTCCTC6810TTCATTGACAACATTTTTAGGTTCACGCAGGCTGGTTCCGAAGTG
PREDICTED: Arabidopsis lyrata subsp. lyrata ATP synthase subunit beta-1, mitochondrial (LOC9307425), mRNA
XM_002873330.2:1074-1088
CGTGATGCCGAAGGCCAAGACGTCTTGCTT1074TTCATTGACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTG
PREDICTED: Heterocephalus glaber dynein axonemal heavy chain 5 (Dnah5), transcript variant X1, mRNA
XM_013072408.2:7215-7229
ATCATAAGGGTGAAGCTAGCCAGTTGTGGC7215TTCATTGACAACATTGTTCTGGCCAGGAAGTTTTTCACACTATAC
PREDICTED: Heterocephalus glaber dynein axonemal heavy chain 5 (Dnah5), transcript variant X2, mRNA
XM_021258622.1:6570-6584
ATCATAAGGGTGAAGCTAGCCAGTTGTGGC6570TTCATTGACAACATTGTTCTGGCCAGGAAGTTTTTCACACTATAC
PREDICTED: Heterocephalus glaber dynein axonemal heavy chain 5 (Dnah5), transcript variant X3, mRNA
XM_021258623.1:7218-7232
ATCATAAGGGTGAAGCTAGCCAGTTGTGGC7218TTCATTGACAACATTGTTCTGGCCAGGAAGTTTTTCACACTATAC
Kazachstania africana CBS 2517 hypothetical protein (KAFR0K00700), partial mRNA
XM_003959511.1:2158-2172
ATAGCAGCAATTAGTAAGTCACTAGCAAAA2158TTCATTGACAACATTCGTGATGAGTCGTCACAAAACTCTGCAGAT
Naumovozyma dairenensis CBS 421 hypothetical protein (NDAI0J02660), partial mRNA
XM_003672353.1:42-56
GAAGATAATACTGCTGTCGTCATGTCTGTT42TTCATTGACAACATTCCTTTTGGTTATCATAGCGACTGCTGGTTC
PREDICTED: Mizuhopecten yessoensis ATP synthase subunit beta, mitochondrial (LOC110452283), mRNA
XM_021500702.1:927-941
CGTGATCAGGAGGGACAGGACGTACTGCTC927TTCATTGACAACATTTTCAGATTCACACAGGCAGGCTCAGAGGTG
Wallemia mellicola CBS 633.66 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase mRNA
XM_006958912.1:1477-1491
CGTGATGACGAAGGTCAAGATGTCTTGCTC1477TTCATTGACAACATTTTCCGTTTCACTCAAGCAGGTTCTGAGGTC
PREDICTED: Aedes aegypti ATP synthase subunit beta, mitochondrial (LOC5577999), mRNA
XM_001656687.2:919-933
CGTGATCAGGAAGGACAGGATGTGCTGCTC919TTCATTGACAACATTTTCCGTTTCACCCAAGCTGGTTCTGAGGTA
PREDICTED: Aedes aegypti ATP synthase subunit beta, mitochondrial (LOC5576214), mRNA
XM_001655941.2:1037-1051
CGCGATCAAGAGGGACAGGATGTGCTGCTC1037TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTA
PREDICTED: Chenopodium quinoa uncharacterized LOC110707360 (LOC110707360), mRNA
XM_021885383.1:823-837
TGTGACATAGAACTACCTGATCCTGACGTC823TTCATTGACAACATTGACTGGGATTCCAATGTCGATCCCAGTCTT
PREDICTED: Zootermopsis nevadensis ATP synthase subunit beta, mitochondrial (LOC110837409), mRNA
XM_022079501.1:949-963
CGAGACCAAGAAGGACAGGATGTGCTGCTG949TTCATTGACAACATTTTCAGGTTCACCCAAGCTGGTTCAGAGGTA
PREDICTED: Momordica charantia ATP synthase subunit beta, mitochondrial (LOC111018677), mRNA
XM_022294875.1:1084-1098
CGTGATGCTGAAGGGCAAGATGTGCTTCTC1084TTCATTGACAACATTTTCCGTTTTACCCAGGCTAATTCAGAGGTG
PREDICTED: Momordica charantia ATP synthase subunit beta, mitochondrial-like (LOC111020045), mRNA
XM_022296600.1:1072-1086
CGTGATGCTGAAGGACAGGATGTGCTTCTC1072TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCTGAGGTG
Cryptococcus amylolentus CBS 6039 ATP synthase subunit beta, mitochondrial (L202_03082), mRNA
XM_019136867.1:970-984
CGTGATGACGAAGGCCAGGATGTGTTGCTC970TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAGGTG
Cryptococcus amylolentus CBS 6039 ATP synthase subunit beta, mitochondrial, variant 1 (L202_03082), mRNA
XM_019136868.1:1124-1138
CGTGATGACGAAGGCCAGGATGTGTTGCTC1124TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAGGTG
Cryptococcus amylolentus CBS 6039 ATP synthase subunit beta, mitochondrial, variant 2 (L202_03082), mRNA
XM_019136869.1:1172-1186
CGTGATGACGAAGGCCAGGATGTGTTGCTC1172TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAGGTG
Isaria fumosorosea ARSEF 2679 ATP synthase beta chain (ISF_06605), partial mRNA
XM_018850209.1:871-885
CGTGATCAGGAAGGCCAGGACGTGCTGCTC871TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAAGTG
Penicillium expansum ATPase, F1 complex beta subunit/V1 complex, C-terminal (PEX2_107420), partial mRNA
XM_016748010.1:874-888
CGTGACGAGGAGGGTCAGGACGTGCTGCTC874TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
Talaromyces atroroseus ATP synthase subunit beta, mitochondrial (UA08_08849), partial mRNA
XM_020263894.1:877-891
CGTGATGAGGAGGGTCAGGATGTGCTTCTC877TTCATTGACAACATTTTCCGTTTCACCCAAGCCGGTTCTGAGGTG
Tsuchiyaea wingfieldii CBS 7118 ATP synthase subunit beta, mitochondrial (L198_01376), partial mRNA
XM_019173539.1:964-978
CGTGATGACGAAGGTCAGGATGTGTTGCTC964TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAGGTG
Kockovaella imperatae putative ATP synthase beta chain mitochondrial precursor (BD324DRAFT_618644), mRNA
XM_022015060.1:1029-1043
CGAGACGAGGAGGGACAGGATGTGTTGCTT1029TTCATTGACAACATTTTCCGATTCACCCAAGCCGGTTCCGAAGTG
Malassezia pachydermatis atp synthase f1 beta subunit (Malapachy_1125), partial mRNA
XM_018135635.1:949-963
CGTGACGACGAGGGTCAGGATGTGCTGCTC949TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGTTCGGAGACT
Lobosporangium transversale P-loop containing nucleoside triphosphate hydrolase protein (BCR41DRAFT_355073), partial mRNA
XM_022024445.1:855-869
CGTGATCAGGAGGGTCAGGATGTGTTGCTC855TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGTTCTGAGGTG
Coprinopsis cinerea okayama7#130 ATP synthase subunit beta (CC1G_01082), partial mRNA
XM_001832968.2:773-787
CGTGACGAGGAAGGCCAGGATGTGTTGCTC773TTCATTGACAACATTTTCCGATTCACTCAAGCTGGTTCTGAAGTG
Pneumocystis murina B123 hypothetical protein (PNEG_00722), partial mRNA
XM_007874432.1:969-983
TTGTTCTACAAATAAAACATTATCAGAAAA969TTCATTGACAACATTTTGCGAACCTTTTTCTTTAAAAGATAATTT
PREDICTED: Limulus polyphemus P protein-like (LOC106472322), partial mRNA
XM_013932959.2:606-620
GTTATATGGGTGTCAGCCATAGCATCCAGT606TTCATTGACAACATTCCATTTACAACTGTTATGATCAAGATTGTT
Parastagonospora nodorum SN15 hypothetical protein (SNOG_01298), mRNA
XM_001791891.1:897-911
CGCGACGAGGAGGGTCAGGACGTGTTGCTC897TTCATTGACAACATTTTCCGCAGGGCCGGTTCCGAGGTGTCTGCT
Fusarium verticillioides 7600 ATP synthase subunit beta, mitochondrial (FVEG_11352), mRNA
XM_018900578.1:1133-1147
CGAGACGAAGAGGGTCAGGACGTGCTGCTT1133TTCATTGACAACATTTTCCGATTCACTCAGGCCGGTTCCGAGGTG
Fusarium verticillioides 7600 ATP synthase subunit beta, mitochondrial (FVEG_11352), mRNA
XM_018900579.1:1042-1056
CGAGACGAAGAGGGTCAGGACGTGCTGCTT1042TTCATTGACAACATTTTCCGATTCACTCAGGCCGGTTCCGAGGTG
Pochonia chlamydosporia 170 1,4-alpha-glucan branching enzyme (VFPPC_03485), partial mRNA
XM_018282981.1:3049-3063
CGTGACCAGGAGGGCCAGGATGTCCTGCTC3049TTCATTGACAACATTTTCCGATTTACTCAAGCCGGATCTGAGGTG
Eremothecium gossypii ATCC 10895 ABR169Wp (AGOS_ABR169W), partial mRNA
NM_208470.2:841-855
AGAGACGAGGAGGGTCAGGATGTGTTGCTG841TTCATTGACAACATTTTCAGATTCACCCAAGCCGGTTCCGAAGTG
PREDICTED: Crassostrea virginica MAP kinase kinase kinase win1-like (LOC111120877), mRNA
XM_022461893.1:2348-2362
TAAACATTAAACAATGTTAAATGACCCGTG2348TTCATTGACAACATTTTATTATTGTTTCTTTACAAATATGTACAT
PREDICTED: Crassostrea virginica cell migration-inducing and hyaluronan-binding protein-like (LOC111122089), mRNA
XM_022463645.1:2018-2032
GTGGCCCATTCAAACCAAAAGAGTGGATTG2018TTCATTGACAACATTCTGAAGAAAGACGGATCTATTTTACAATCC
PREDICTED: Crassostrea virginica laminin subunit gamma-1-like (LOC111122827), mRNA
XM_022464818.1:2073-2087
AGAGCCACGTACAACAATGAGGGTGTGGGA2073TTCATTGACAACATTAAACTGGACACAGCAAGACAAGGCTCAAAT
PREDICTED: Crassostrea virginica laminin subunit gamma-1-like (LOC111111291), transcript variant X1, mRNA
XM_022448172.1:2073-2087
AGAGCCACATACAACAATGAGGGTGTGGGA2073TTCATTGACAACATTAAACTGGACACAGCAAGACAAGGCTCAAAT
PREDICTED: Crassostrea virginica laminin subunit gamma-1-like (LOC111111291), transcript variant X2, mRNA
XM_022448173.1:1039-1053
AGAGCCACATACAACAATGAGGGTGTGGGA1039TTCATTGACAACATTAAACTGGACACAGCAAGACAAGGCTCAAAT
PREDICTED: Crassostrea virginica mucin-3A-like (LOC111113485), mRNA
XM_022451781.1:235-249
ATACAAGAAAGTGTTGCTGATTTTTCTGAT235TTCATTGACAACATTATCAGCTGTAGTTGCAATTCCTACTGTTCT
PREDICTED: Crassostrea virginica mucin-3A-like (LOC111113485), mRNA
XM_022451781.1:1639-1653
ATACAAGAAAGTGTTGCTGATTTTTCTGAT1639TTCATTGACAACATTATCAGCTGTAGTTGCAATTCCTACTGTTCT
PREDICTED: Crassostrea virginica mucin-3A-like (LOC111113486), mRNA
XM_022451782.1:323-337
ATACAAGAAAGTGTTGCTGATTTTTCTGAT323TTCATTGACAACATTATCAGCTGTAGTTGCAATTCCTACTGTTCT
Candida orthopsilosis Co 90-125 Atp2 F1 beta subunit of F1F0 ATPase complex (CORT_0E02270), partial mRNA
XM_003869897.1:829-843
AGAGATGAAGAAGGTCAAGATGTCTTGTTG829TTCATTGACAACATTTTCAGATTCACCCAAGCTGGTTCGGAAGTG
Aspergillus glaucus CBS 516.65 hypothetical protein (ASPGLDRAFT_50266), mRNA
XM_022547272.1:927-941
CGTGACATCGAGGGTCAAGACGTGCTGCTC927TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCTGAGGTG
Aspergillus bombycis ATP synthase F1-sector subunit beta (ABOM_011529), partial mRNA
XM_022538657.1:868-882
CGTGACGAGGAGGGTCAGGATGTGCTGCTC868TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCTGAGGTG
Zygosaccharomyces rouxii uncharacterized protein (ZYRO0D01760g), partial mRNA
XM_002496464.1:841-855
AGAGATGAAGAAGGTCAAGATGTCTTGCTT841TTCATTGACAACATTTTCAGATTTACCCAAGCTGGTTCCGAAGTG
Penicillium arizonense hypothetical protein (PENARI_c009G00142), partial mRNA
XM_022631702.1:868-882
CGTGACGAGGAGGGTCAGGATGTGCTGCTC868TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/refseq/TTCATTGACAACATT
lang : en | db : refseq | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.213 | 0.204 | search_plus_done; http://172.18.8.137:27493/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.262 | 0.049 | search_minus_done; http://172.18.8.137:27493/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=0
0.262 | 0.000 | cgi_end;

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