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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-20 03:33:08, GGGenome : RefSeq complete RNA release 220 (Sep, 2023)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Fusarium pseudograminearum CS3096 hypothetical protein partial mRNA
XM_009256653.1:319-333
CTATATCTGAGTATTCCAGTTCAAAAGACG319AATGTTGTCAATGAAGACTTTCAGTCCATGAGTGAAACCTCTACC
Pediculus humanus corporis conserved hypothetical protein, mRNA
XM_002422826.1:226-240
ATAGGACAACCGTGGGCAACGGCTTTTACA226AATGTTGTCAATGAAAAAGGAGAAGAATTAGATCCTATAATATTT
Dictyostelium discoideum AX4 ABC transporter G family protein (abcG17-1) mRNA, complete cds
XM_639651.1:3367-3381
GAAGCTTGGAAACAATCATCAGAGTATCAA3367AATGTTGTCAATGAATTGGATCTTTTAAGAACAAAAGAAGAATTG
Dictyostelium discoideum AX4 ABC transporter G family protein (abcG17-2) mRNA, complete cds
XM_639415.1:3367-3381
GAAGCTTGGAAACAATCATCAGAGTATCAA3367AATGTTGTCAATGAATTGGATCTTTTAAGAACAAAAGAAGAATTG
Dictyostelium discoideum AX4 valyl tRNA synthetase (valS1) mRNA, complete cds
XM_637377.1:2959-2973
AGTGATGAATCTCGTCCTGGTTGTATCGTT2959AATGTTGTCAATGAAAATGTTTCAACCCTTTTAGATGTTAGAGGA
PREDICTED: Ipomoea nil phosphoinositide phosphatase SAC2-like (LOC109190672), transcript variant X1, mRNA
XM_019341222.1:2893-2907
ATCTCTCCAATTGCTGGTATGTCATCAGAT2893AATGTTGTCAATGAAATGGCTGGAGAATCTACCCCTTCCACCAGT
PREDICTED: Ipomoea nil phosphoinositide phosphatase SAC2-like (LOC109190672), transcript variant X2, mRNA
XM_019341223.1:2869-2883
ATCTCTCCAATTGCTGGTATGTCATCAGAT2869AATGTTGTCAATGAAATGGCTGGAGAATCTACCCCTTCCACCAGT
PREDICTED: Ipomoea nil phosphoinositide phosphatase SAC2-like (LOC109190672), transcript variant X3, mRNA
XM_019341224.1:2827-2841
ATCTCTCCAATTGCTGGTATGTCATCAGAT2827AATGTTGTCAATGAAATGGCTGGAGAATCTACCCCTTCCACCAGT
PREDICTED: Aptenodytes forsteri diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), mRNA
XM_009284192.2:2845-2859
GAACAATGGAAACGAGCTATGGATTATTTA2845AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X1, mRNA
XM_019404357.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X2, mRNA
XM_019404358.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X3, mRNA
XM_019404359.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X4, mRNA
XM_019404360.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X5, mRNA
XM_019404361.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X6, mRNA
XM_019404362.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X7, mRNA
XM_019404363.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X8, mRNA
XM_019404364.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X9, mRNA
XM_019404365.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X10, mRNA
XM_019404366.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X11, mRNA
XM_019404367.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X12, mRNA
XM_019404368.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X13, mRNA
XM_019404369.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X14, mRNA
XM_019404370.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X15, mRNA
XM_019404371.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X16, mRNA
XM_019404372.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X17, mRNA
XM_019404373.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109237960), transcript variant X18, mRNA
XM_019404374.1:1680-1694
GCCCAATGAAGCTCTTAAAATTTTCCATGA1680AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109215633), transcript variant X1, mRNA
XM_019379736.1:1270-1284
GCCCAATGAAGCTCTCAAAATTTTCCATGA1270AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Nicotiana attenuata putative pentatricopeptide repeat-containing protein At5g37570 (LOC109215633), transcript variant X2, mRNA
XM_019379737.1:1270-1284
GCCCAATGAAGCTCTCAAAATTTTCCATGA1270AATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X1, mRNA
XM_019483996.1:3072-3086
GATCAGTGGAAGCGAGCTATGGATTATCTC3072AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X2, mRNA
XM_019484003.1:3082-3096
GATCAGTGGAAGCGAGCTATGGATTATCTC3082AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X3, mRNA
XM_019484009.1:3025-3039
GATCAGTGGAAGCGAGCTATGGATTATCTC3025AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X4, mRNA
XM_019484014.1:3028-3042
GATCAGTGGAAGCGAGCTATGGATTATCTC3028AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X5, mRNA
XM_019484017.1:3012-3026
GATCAGTGGAAGCGAGCTATGGATTATCTC3012AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X6, mRNA
XM_019484022.1:3072-3086
GATCAGTGGAAGCGAGCTATGGATTATCTC3072AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X7, mRNA
XM_014597237.2:2943-2957
GATCAGTGGAAGCGAGCTATGGATTATCTC2943AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X8, mRNA
XM_019484029.1:3072-3086
GATCAGTGGAAGCGAGCTATGGATTATCTC3072AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X9, mRNA
XM_019484039.1:3072-3086
GATCAGTGGAAGCGAGCTATGGATTATCTC3072AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X10, mRNA
XM_019484050.1:3072-3086
GATCAGTGGAAGCGAGCTATGGATTATCTC3072AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X11, mRNA
XM_019484060.1:2943-2957
GATCAGTGGAAGCGAGCTATGGATTATCTC2943AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X12, mRNA
XM_019484066.1:2943-2957
GATCAGTGGAAGCGAGCTATGGATTATCTC2943AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X13, mRNA
XM_019484071.1:3072-3086
GATCAGTGGAAGCGAGCTATGGATTATCTC3072AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X14, mRNA
XM_019484076.1:3072-3086
GATCAGTGGAAGCGAGCTATGGATTATCTC3072AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X15, misc_RNA
XR_002089327.1:3072-3086
GATCAGTGGAAGCGAGCTATGGATTATCTC3072AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X16, mRNA
XM_014597235.2:2943-2957
GATCAGTGGAAGCGAGCTATGGATTATCTC2943AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Alligator mississippiensis diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X17, mRNA
XM_019484094.1:3072-3086
GATCAGTGGAAGCGAGCTATGGATTATCTC3072AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Gavialis gangeticus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X1, mRNA
XM_019517219.1:3066-3080
GATCAGTGGAAGCGAGCTATGGATTATCTC3066AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Gavialis gangeticus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X2, mRNA
XM_019517220.1:3036-3050
GATCAGTGGAAGCGAGCTATGGATTATCTC3036AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Gavialis gangeticus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X3, mRNA
XM_019517221.1:3083-3097
GATCAGTGGAAGCGAGCTATGGATTATCTC3083AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
PREDICTED: Gavialis gangeticus diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2), transcript variant X4, mRNA
XM_019517223.1:3006-3020
GATCAGTGGAAGCGAGCTATGGATTATCTC3006AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/refseq220/AATGTTGTCAATGAA
lang : en | db : refseq220 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.382 | 0.374 | search_plus_done; http://172.18.8.135:28957/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.418 | 0.036 | search_minus_done; http://172.18.8.135:28957/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=0
0.418 | 0.000 | cgi_end;

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