GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2020-04-05 10:26:27, GGGenome : Rhesus genome, BCM Mmul_8.0.1/rheMac8 (Nov, 2015)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2:84932518-84932532
ACTATGCTGCACTCCAAATACTATTGTGTT84932518TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
chr5:148783400-148783414
CAGAATATATTATCGCTTTGAACACAGATT148783400TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
chr5:166076289-166076303
TAAAACCTCTGATTTTGTGTAACACTCCTT166076289TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGACTACAT
chr5:181854932-181854946
TTTGGACCCCCAGATCAGTCTTCATATTCT181854932TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
chr5:186782804-186782818
GCCTGAGCCACCATGCCCAGCTTGCTCTTC186782804TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
chr16:14229073-14229087
GCCTCTGGGCCTATATTAGATGGGCCATGC14229073TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
chr17:48381875-48381889
TGTTCAAAGTTTTCCCCTCCAATGTATTTT48381875TTCATTGACAACATTCGGATTTATCACATCAATCAGTCAATAAAT
chr17:65645994-65646008
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA65645994TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAA
chr19:36849207-36849221
GTGAGCCACCACACCGGCCTATCTTAGCTT36849207TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
chr6:9794265-9794279
GAGGGCCTTTCCAGCTCCAAGGTCAATGGC9794265AATGTTGTCAATGAAAGATCAGCAGGTCAGTGCCTTATACCCAGA
chr11:78026872-78026886
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA78026872AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
chr14:41574517-41574531
GTTTGCTCTATTCACTGTCCTCAACGCTAG41574517AATGTTGTCAATGAACAAGACATATCTATGTTCCTGGAAACTCAA
chr19:36640266-36640280
ACTCCCTTAGGAGAGCTGTAACATTATACT36640266AATGTTGTCAATGAAAAGCTAAGACAGGCCAGGGGTGGTGGCTCA
chr19:36691285-36691299
CTCCCTTAGGAGAGCCGTTAACATTATACT36691285AATGTTGTCAATGAAAAAGCTAAGATAGGCAGGGCGTGGTGGCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/rheMac8/TTCATTGACAACATT
lang : en | db : rheMac8 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.006 | 0.006 | search_start;
0.082 | 0.077 | search_plus_done; http://172.18.8.77:28771/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.098 | 0.016 | search_minus_done; http://172.18.8.77:28771/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=41
0.102 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).