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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-04-28 09:42:10, GGGenome : Tarsier genome, Broad/tarSyr1 (Aug, 2008)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

scaffold_5725:12068-12082
TGTGACTAGAGGTTCTCCCTGGAGGCTGTA12068TTCATTGACAACATTGCCTGAGGTAACTCACGCTGAAGGTGACAA
scaffold_8200:3556-3570
TGTACAAGGGCTTGGATATCACAAGGCACA3556TTCATTGACAACATTAATGTAACAATGCAGCACACTATAAAGTTA
scaffold_10217:10527-10541
AAGATTTCCTTCATTGTAAAAAGTACACAT10527TTCATTGACAACATTTTAAAACATGTGTTACCCAGTGTTTACCAA
scaffold_23247:10610-10624
ATGACATAAGCATTGTTGGATTTGTTTAAG10610TTCATTGACAACATTCCCGTCTTTGCCTTTTAAGTTCTGAACCAA
scaffold_43008:7485-7499
CCAGTATACTGCACTCCAAATACTATTGTT7485TTCATTGACAACATTCACTATTACATATGCATATGAAAAACAGGC
scaffold_78535:258-272
TTTGGCCTTTTGACAATTAGTCAATTATTC258TTCATTGACAACATTTTGACCTCATTACCCAGTAGTTATTAAACT
scaffold_119512:3449-3463
TTATCTTAATTAGTGTGAATATTCATAAGT3449TTCATTGACAACATTAATGTGTTTGATTATGTGTTTGATTATGGG
scaffold_120121:4420-4434
CTCCCTATCTTTTATTCCCTAGTCCATTGT4420TTCATTGACAACATTCTTGACTGTCTCCCTCCTTTGTCTATCGTA
scaffold_16346:10402-10416
GTACATTTTCTGCTAAAGCCATACCTGGTT10402AATGTTGTCAATGAATATAACCGAAGGTATAGACCAATGTTTGAT
scaffold_23841:3286-3300
ATTTTTTAATTCACTGCCTATGAAGTTTTG3286AATGTTGTCAATGAAACAATATGCATTATAGAGCCTGAATCCCAG
scaffold_78641:12543-12557
ACATCACTGTGTATTCCGTGAATAGGCACA12543AATGTTGTCAATGAAGTTTTTATAATTTTAAAAAGTATAAGTACA
scaffold_505952:924-938
CAAGAGATTCATAGCAGAAACCTTGTGTCA924AATGTTGTCAATGAAGGTTTTTTGAAGGGATGGGTTAACACTACA
scaffold_546974:505-519
ATGCAAGATGGCTTGAATGAATTTGTATCC505AATGTTGTCAATGAAAGGAAGGTGAGGAGGGAAGGAGAACCCTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/tarSyr1/TTCATTGACAACATT
lang : ja | db : tarSyr1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.77:28063/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.007 | search_minus_done; http://172.18.8.77:28063/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=42
0.089 | 0.001 | cgi_end;

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