GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-20 00:17:50, GGGenome : Xenopus tropicalis genome, JGI 9.1/xenTro9 (Jul, 2016)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2:154736189-154736203
AGGGAGTGGTGTGTGGAACTGGTATTCCAG154736189TTCATTGACAACATTACCTTGAAATAAATGGGGTTTGGAGGCAGA
chr7:82541248-82541262
ACGGGCATCTGAAAATGTGAAAATACCACA82541248TTCATTGACAACATTGTATTGAGAAGTTTATAAAATAATGTGAAG
chrUn_NW_016683401v1:415813-415827
CACTCTCACAATATTCAATATTTTGGTTGC415813TTCATTGACAACATTATTCTTATATGGTCCGGTACCGATGAACAA
chr1:35419739-35419753
GGAGCGATTTGCACAGAAGAAACCTGGATA35419739AATGTTGTCAATGAACGCACAGTTGCAGTCATAACTGAACCCTAT
chr4:93382576-93382590
CCAATAGCTTTGGGAATGAGCAGTGTAAGC93382576AATGTTGTCAATGAAACAAAATTATACAGGCCAATAACTTATTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/xenTro9/TTCATTGACAACATT
lang : en | db : xenTro9 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.76:28776/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.004 | search_minus_done; http://172.18.8.76:28776/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.086 | 0.000 | cgi_end;

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