GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 17:28:12, GGGenome : Paroedura picta genome, Ppicta_assembly_v1 (Mar, 2018)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BDOT01000035.1 Paroedura picta DNA, scaffold00000035, whole genome shotgun sequence
position: 351059-351073
AAGGACATAACATATGCAAGTTATGTGCAA351059TTCATTGACAACATTGTCTTTACAAAACAATTACCCCACTATTTT
BDOT01000037.1 Paroedura picta DNA, scaffold00000037, whole genome shotgun sequence
position: 6524319-6524333
TGTAAACATGAGCTCAGAGGACTGGAATCT6524319TTCATTGACAACATTAAATAAACAGTTCTTAACAAAACAGGAGAT
BDOT01000208.1 Paroedura picta DNA, scaffold00000208, whole genome shotgun sequence
position: 1391464-1391478
CTACTGTTTTTGTCTGAATTTATGGAAGCA1391464TTCATTGACAACATTGCATACTTGTGGTTGGTAAGTGGATAAAAG
BDOT01000308.1 Paroedura picta DNA, scaffold00000308, whole genome shotgun sequence
position: 230670-230684
CACCCACTCACATCTCTCGTATGCCTGCGA230670TTCATTGACAACATTTTAATCGTCTGGACACATGGTAAAGAAGCC
BDOT01003333.1 Paroedura picta DNA, scaffold00003333, whole genome shotgun sequence
position: 4259-4273
TTCCCATTGGCACCTTTCCTTTAAATGAGA4259TTCATTGACAACATTTTCATTGCCTGCACCCATGGCAAAGTCCTC
BDOT01000032.1 Paroedura picta DNA, scaffold00000032, whole genome shotgun sequence
position: 5481685-5481699
AAATAAAATAAAATAAAATAAAATAAAATA5481685AATGTTGTCAATGAAGCAACGGAAGGCCTGTGCTGAGGGCTTCGG
BDOT01000040.1 Paroedura picta DNA, scaffold00000040, whole genome shotgun sequence
position: 6494347-6494361
TAGCTCTAACTGGCAGGAAGGAGAAATATA6494347AATGTTGTCAATGAAAAATTTAATCCTATTATTGCAAATGGAATT
BDOT01000055.1 Paroedura picta DNA, scaffold00000055, whole genome shotgun sequence
position: 5361892-5361906
TATTCAATTAAAATGAACAGACCGTATTCA5361892AATGTTGTCAATGAATTATGGGACTTCAACAATCCTGGTAGCATG
BDOT01000063.1 Paroedura picta DNA, scaffold00000063, whole genome shotgun sequence
position: 2613462-2613476
CAAGCAGAAGTGCATAGCACCTGAGGAAAT2613462AATGTTGTCAATGAAGGACAGCGTCTGCAGTGCTGAGAGAGAACT
BDOT01000863.1 Paroedura picta DNA, scaffold00000863, whole genome shotgun sequence
position: 36734-36748
TGGCCCACCTTGGGCAGAAAGGTTGTGTGA36734AATGTTGTCAATGAATAAAAGAAGAGTCAGGGCTCCAGCTTTGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/GCA_003118565.1/TTCATTGACAACATT
lang : en | db : GCA_003118565.1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.72:28847/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.007 | search_minus_done; http://172.18.8.72:28847/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.092 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).