GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-27 05:23:51, GGGenome : Zea mays genome, AGPv3 (Apr, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

1 dna:chromosome chromosome:AGPv3:1:1:301476924:1
position: 111664097-111664111
ATGCCCAAACTGGACAGGTTTGTGGTAGTG111664097TTCATTGACAACATTCTAATATATTCCAAGAATAAAGAAGAGCAT
2 dna:chromosome chromosome:AGPv3:2:1:237917468:1
position: 15038754-15038768
CTTCCTTTTAGAAACAGGTCTACGCGAACT15038754TTCATTGACAACATTTGCATATATATATATATATATATATTCATT
2 dna:chromosome chromosome:AGPv3:2:1:237917468:1
position: 125864327-125864341
ATGCCAGAGCTGGACAAGTTTGTGGTGGTT125864327TTCATTGACAACATTCTGGTTTATTCCAAAAATGAAGCTGAGCAT
2 dna:chromosome chromosome:AGPv3:2:1:237917468:1
position: 130414964-130414978
ATGGAATATCTTGATAAGTTTGTTGTGGTA130414964TTCATTGACAACATTCTGATCTATTCCAAAAATGATGGAGAAAAT
2 dna:chromosome chromosome:AGPv3:2:1:237917468:1
position: 185574206-185574220
AGCATTTAAAGCATGATAAATTGTAGAAGG185574206TTCATTGACAACATTTCTCCTAGGCATATGAACAACATTTCTACC
3 dna:chromosome chromosome:AGPv3:3:1:232245527:1
position: 105794437-105794451
ATGCCCGAGTTGGATAAATTTGTGGTGGTC105794437TTCATTGACAACATTCTGATCTATTCCAAAGATGAAGAGGAGCAT
3 dna:chromosome chromosome:AGPv3:3:1:232245527:1
position: 194908102-194908116
CTCGACACCCCTGTCAATGTGAGGGAGGTC194908102TTCATTGACAACATTTCTCACATACATCATTATCGGGACAATATT
3 dna:chromosome chromosome:AGPv3:3:1:232245527:1
position: 199882103-199882117
AGCATTTAAAGCATGATAAATTGTAGAAGG199882103TTCATTGACAACATTTCTCCTAGGCATATGAACAACATTTCTACC
4 dna:chromosome chromosome:AGPv3:4:1:242062272:1
position: 50600960-50600974
TTTTTACTACACCAGTTGTAGATTGATCGA50600960TTCATTGACAACATTGGCTGTCATTGTAAAAGGGCAAAGCAGTAG
4 dna:chromosome chromosome:AGPv3:4:1:242062272:1
position: 224402030-224402044
ATGGAATTTCTTGATAAGTTCATCGTGGTA224402030TTCATTGACAACATTCTGGTTTATTCCAAGTATGATGGAGAACAT
5 dna:chromosome chromosome:AGPv3:5:1:217959525:1
position: 44940309-44940323
ATGGAAGAGCTGGATAAGTTTGTCGTAGTC44940309TTCATTGACAACATTCTTATCTACTCCAAGAACCGCGAAGACCAT
7 dna:chromosome chromosome:AGPv3:7:1:176826311:1
position: 45912776-45912790
ATGGAAGAGTTAGATAAGTTTGTCGTAGTC45912776TTCATTGACAACATTCTCATCTACTCCAAGAGTCAACAGGAGCAT
7 dna:chromosome chromosome:AGPv3:7:1:176826311:1
position: 124791033-124791047
CCTAATAGCAAATTCCGTGTTCCACATCAT124791033TTCATTGACAACATTCATCAACTCTTGAATGGAAGCCTTCTCTCT
7 dna:chromosome chromosome:AGPv3:7:1:176826311:1
position: 169549472-169549486
AGCATTTAAAGCATGATAAATTGTAGAAGG169549472TTCATTGACAACATTTCTCCTAGGCATATGAACAAACATTTCTAC
9 dna:chromosome chromosome:AGPv3:9:1:157038028:1
position: 73016418-73016432
ATGCCCGAGTTGGATAAATTTATGGTGGTC73016418TTCATTGACAACATTTTGATCTATTCCAAAAAGTAAGAGGAGCAT
10 dna:chromosome chromosome:AGPv3:10:1:149632204:1
position: 30932722-30932736
TTCATCGAGCTGGATAAATTTGTGGTGGTT30932722TTCATTGACAACATTCTTATCTATTCCAAAAATGAAGAGGAGCAT
10 dna:chromosome chromosome:AGPv3:10:1:149632204:1
position: 64338008-64338022
AAGCCCGAATTAGACAAGTTTGTGGTGGTC64338008TTCATTGACAACATTTTGATCTATTCCAAGAATGAGGAGGAGCAT
10 dna:chromosome chromosome:AGPv3:10:1:149632204:1
position: 73782247-73782261
ATGGACTATCTCGATAAGTTTGTGGTGGTA73782247TTCATTGACAACATTCTGATTTATTCTCAAAGCGAAGAAGAGCAT
1 dna:chromosome chromosome:AGPv3:1:1:301476924:1
position: 161218196-161218210
ATGCTCCTCTTTATTTTTGGAATAGATTAG161218196AATGTTGTCAATGAAGACCACCACAAACTTATCTAACTCGAGCAT
2 dna:chromosome chromosome:AGPv3:2:1:237917468:1
position: 112808274-112808288
ACTTTTGGCAGGCCTCACCAACGGCTCCTC112808274AATGTTGTCAATGAACAGCTTGTAGAAAAGCCTCTCGTTCCCTTC
2 dna:chromosome chromosome:AGPv3:2:1:237917468:1
position: 147542112-147542126
TGTTCCTCTTCATTTTTGGAATAGATCAAA147542112AATGTTGTCAATGAAGACCACCACACATTTATCCAACTCGAGCAT
2 dna:chromosome chromosome:AGPv3:2:1:237917468:1
position: 186023977-186023991
AGAGAGAAGGCTTCCATTCAAGAGTTGATG186023977AATGTTGTCAATGAAATGATGTGGAACACAGAATTTGGTATTAGG
3 dna:chromosome chromosome:AGPv3:3:1:232245527:1
position: 53407378-53407392
ATGCTCCTCTTCATTTTTGGAATAGATCAG53407378AATGTTGTCAATGAAGACCACCACAAATTTATCCAATTCGGGCAT
4 dna:chromosome chromosome:AGPv3:4:1:242062272:1
position: 74835061-74835075
ATGCTACTCTTCATTTTTGGAATAGATCAG74835061AATGTTGTCAATGAAGACCACCACAAACTTGTCTAACTCAGGCAT
4 dna:chromosome chromosome:AGPv3:4:1:242062272:1
position: 123113608-123113622
ATGCTCCTCTTCATTTTTGGAATAGATCAG123113608AATGTTGTCAATGAAGACCACCACAAACTTGTCTAACTCAGGCAT
6 dna:chromosome chromosome:AGPv3:6:1:169407836:1
position: 4909160-4909174
GGTAGAAATGTTGTTCATATGCCTAGGAGA4909160AATGTTGTCAATGAACCTTCTACAATTTATCATGCTTTAAAAGCT
7 dna:chromosome chromosome:AGPv3:7:1:176826311:1
position: 99776171-99776185
ATGTTCTTCGTCATCTTTGGAATAGATCAG99776171AATGTTGTCAATGAATACCACAACAAACTTATCAAGATATTCCAT
8 dna:chromosome chromosome:AGPv3:8:1:175377492:1
position: 81714034-81714048
AGAAGAAATGTTGTTCATATGCCTAGGAGA81714034AATGTTGTCAATGAACCTTCTACAATTTATCATGCTTTAAATGCT
9 dna:chromosome chromosome:AGPv3:9:1:157038028:1
position: 51078317-51078331
ATGCTCCTTTTCATTTTTGGAATAGATCAG51078317AATGTTGTCAATGAAGACCACCACAAATTTATCCAACTCGGGCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/AGPv3/TTCATTGACAACATT
lang : en | db : AGPv3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.089 | 0.080 | search_plus_done; http://172.18.8.75:28205/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.104 | 0.016 | search_minus_done; http://172.18.8.75:28205/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=32
0.111 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).