GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-23 18:45:56, GGGenome : Schistosoma mansoni genome, ASM23792v2 (Apr, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

1 dna:chromosome chromosome:ASM23792v2:1:1:65476681:1
position: 17027244-17027258
AAGTTTATTAGGCTCATAATTCACAAAGCG17027244TTCATTGACAACATTTAAAATACAGTGCCTCTATAATGCAACTGA
4 dna:chromosome chromosome:ASM23792v2:4:1:32115376:1
position: 21725387-21725401
AGAAGAAGAAATTGAAAGTGAAGAATTCAA21725387TTCATTGACAACATTTCAATCATGTAATACTGAAAAGAATTTAAA
Chr_1.unplaced.SC_0135 dna:supercontig supercontig:ASM23792v2:Chr_1.unplaced.SC_0135:1:857621:1
position: 388970-388984
TCACGAAACTTAAACTACCTACTTGTCACA388970TTCATTGACAACATTCAGCTGAATGGTAATTTAACCGTTTTTTAC
Chr_5.unplaced.SC_0198 dna:supercontig supercontig:ASM23792v2:Chr_5.unplaced.SC_0198:1:459784:1
position: 174516-174530
GTATAATAATAATAATAATCTGAAAAAGAA174516AATGTTGTCAATGAATGCTTACACAACTAATGGTTGACTTTTAAA
SC_0013 dna:supercontig supercontig:ASM23792v2:SC_0013:1:3605463:1
position: 3455704-3455718
AATTTAGACGAAAGTTCTTATATTTAACTC3455704AATGTTGTCAATGAATAAAAAGAAATTGTCATCATTACTTGGCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ASM23792v2/TTCATTGACAACATT
lang : en | db : ASM23792v2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.76:28158/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.005 | search_minus_done; http://172.18.8.76:28158/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.087 | 0.001 | cgi_end;

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