GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-25 10:17:52, GGGenome : Triticum urartu genome, ASM34745v1 (Apr, 2013)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

scaffold105910 dna:supercontig supercontig:GCA_000347455.1:scaffold105910:1:29383:1
position: 18279-18293
AAGTAGATAAAGACTACTAAAGGCCATCTA18279AATGTTGTCAATGAAAAGAAGGCAAATAAGTGTTTGCTTTTAAGG
scaffold46349 dna:supercontig supercontig:GCA_000347455.1:scaffold46349:1:147559:1
position: 80524-80538
TCCATTAACTTCAAAATGAACTCACATGTC80524AATGTTGTCAATGAAAAATGTCGTAACATATGATGACCATGTTTC
scaffold50548 dna:supercontig supercontig:GCA_000347455.1:scaffold50548:1:56154:1
position: 46240-46254
TCTCCAGATTGTACAGCTGCAGCAAATTGA46240TTCATTGACAACATTCTAATTAGTTTCATGCAACACCGTTTGCAG
scaffold1652 dna:supercontig supercontig:GCA_000347455.1:scaffold1652:1:65489:1
position: 24586-24600
AGCTATCAGCCTTACCACATAAAGTCCTCT24586TTCATTGACAACATTGACCACATCCCGCCGAGAGCACCAAGGCAG
scaffold45307 dna:supercontig supercontig:GCA_000347455.1:scaffold45307:1:65524:1
position: 38728-38742
CCATGTACAGTACTCTTCCGACAGAAGTCG38728TTCATTGACAACATTGACCACGCCGTGCCGAGAGCACCAGGGCGG
scaffold12975 dna:supercontig supercontig:GCA_000347455.1:scaffold12975:1:144209:1
position: 29683-29697
CCGTGTACAGTCGTCTTCCGATGGCTGTCG29683TTCATTGACAACATTGACCATGCCGCGCCGATAGCACTAAGGCGG
scaffold6351 dna:supercontig supercontig:GCA_000347455.1:scaffold6351:1:156867:1
position: 41816-41830
CCGTGTACAGTCATCTTCCGATGTATGTCG41816TTCATTGACAACATTGACCACACCATGTCGAGAGCACAAAGGCGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ASM34745v1/AATGTTGTCAATGAA
lang : ja | db : ASM34745v1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.75:28203/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.007 | search_minus_done; http://172.18.8.75:28203/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=48
0.094 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).