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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-21 20:41:40, GGGenome : Oryza sativa Indica genome, ASM465v1 (Jan, 2005)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

3 dna:chromosome chromosome:ASM465v1:3:1:41884883:1
position: 10549386-10549400
TGATCCCAATAGTTGTTTATTTTTGGACTC10549386TTCATTGACAACATTGCCACTTTGATGACTGTTCTGACATGAATG
7 dna:chromosome chromosome:ASM465v1:7:1:27957088:1
position: 11845904-11845918
CGTGTGCCTCCTGGATGCACCAATCGGCTG11845904TTCATTGACAACATTTTGTTGAAGGACCTTGGCAACATCTTTTTG
7 dna:chromosome chromosome:ASM465v1:7:1:27957088:1
position: 22396635-22396649
AGATCTATCTAATTTAGGTGTAGTGCTCTC22396635TTCATTGACAACATTTTTCACTTCCTGCGTTAGGTTTCCATTATC
9 dna:chromosome chromosome:ASM465v1:9:1:21757032:1
position: 14677856-14677870
CTTTCAAATGATGGTCAAACTAATTATAAA14677856TTCATTGACAACATTAACTAAACGAGTGAAGAGTGAAGAGAAGAT
2 dna:chromosome chromosome:ASM465v1:2:1:38103930:1
position: 33044774-33044788
GAGCAAGCCATGAATCGGTACAAACAAGAG33044774AATGTTGTCAATGAACAGGTCTTATCCACACGTCGGACATCAGGA
5 dna:chromosome chromosome:ASM465v1:5:1:31240961:1
position: 9528623-9528637
TATGATTGAGCACCCCTACCTACTTTGCAA9528623AATGTTGTCAATGAACTGTTTGTTCGCTACATAAATGTTCAATGA
5 dna:chromosome chromosome:ASM465v1:5:1:31240961:1
position: 28795206-28795220
TCTTGCATAAATTACCTGAGTGAAACGGAA28795206AATGTTGTCAATGAACAAAAGCACATCTTGTCCTTCGGCATCACG
10 dna:chromosome chromosome:ASM465v1:10:1:22204031:1
position: 3787614-3787628
CCCCTCCATAAGCAGCCTCTTTTCCCTATC3787614AATGTTGTCAATGAATGTTTTAGGCAGCTGCAAAGTGCACATGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ASM465v1/TTCATTGACAACATT
lang : en | db : ASM465v1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.089 | 0.080 | search_plus_done; http://172.18.8.75:28190/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.096 | 0.007 | search_minus_done; http://172.18.8.75:28190/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.099 | 0.003 | cgi_end;

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