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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-24 22:23:50, GGGenome : Aedes aegypti genome, AaegL3 (Dec, 2013)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

supercont1.1312 dna:supercontig supercontig:AaegL3:supercont1.1312:1:135540:1
position: 33451-33465
TGCCAAAAATCTTTGGAATATCATGATAAT33451AATGTTGTCAATGAAGTTGTATAGTGGCCGTTCATTAATAACGCA
supercont1.457 dna:supercontig supercontig:AaegL3:supercont1.457:1:950089:1
position: 470034-470048
CTTTTTAGCACCTTTTGGTTTCATCCTGTA470034AATGTTGTCAATGAAAACATCGATTAGTTATTATTTTTTGATCAA
supercont1.315 dna:supercontig supercontig:AaegL3:supercont1.315:1:1341213:1
position: 184620-184634
CTTTTGTTGTAGAATCGTGATGTAAGGTCA184620AATGTTGTCAATGAACCTTTGTTATACTCTGCGGATTCCTAGTTG
supercont1.85 dna:supercontig supercontig:AaegL3:supercont1.85:1:2749456:1
position: 596593-596607
TACCTCAGAACCAGCTTGGGTGAAACGGAA596593AATGTTGTCAATGAAGAGCAGCACATCCTGTCCTTCCTGATCACG
supercont1.69 dna:supercontig supercontig:AaegL3:supercont1.69:1:2946165:1
position: 134132-134146
TACCTCGGAACCGGCCTGGGTGAAACGGAA134132AATGTTGTCAATGAAGAGCAGCACATCCTGTCCCTCTTGATCGCG
supercont1.13 dna:supercontig supercontig:AaegL3:supercont1.13:1:4376253:1
position: 1297560-1297574
AACGGCCAAAGCAGTTCAAAGATCTCTGCA1297560AATGTTGTCAATGAAAATTGAACGCAGTATTTTCGATGCACTTTT
supercont1.1295 dna:supercontig supercontig:AaegL3:supercont1.1295:1:143593:1
position: 91031-91045
AATCTCCTTCTGATCGTTCAAAATTCGTAG91031TTCATTGACAACATTTGATAAAAACAGCCACTAAAAAAGGATATT
supercont1.541 dna:supercontig supercontig:AaegL3:supercont1.541:1:819817:1
position: 292038-292052
TTGATCAAAAAACAATAACTGATCGATGTT292038TTCATTGACAACATTTACAGGATGAAACCAAAAGGTGCTAAAAAG
supercont1.67 dna:supercontig supercontig:AaegL3:supercont1.67:1:3004230:1
position: 668459-668473
ATGATCAAAAAACAATAACTGATCGATGTT668459TTCATTGACAACATTTACAGGATGAAACCTAAAGGTGCTAAAAAG
supercont1.36 dna:supercontig supercontig:AaegL3:supercont1.36:1:3595646:1
position: 3456408-3456422
CATCAATTTATCTCAGTATATAAAAGACGG3456408TTCATTGACAACATTTTTTTTCTCGCTAAGAAAGAGGAGATTGTT
supercont1.1 dna:supercontig supercontig:AaegL3:supercont1.1:1:5856339:1
position: 1593639-1593653
AACAACTTTCAAAACACCTAATTTCAGTTT1593639TTCATTGACAACATTTAAAGATCATTACCGATATTTGAATGTTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/AaegL3/AATGTTGTCAATGAA
lang : ja | db : AaegL3 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.079 | 0.070 | search_plus_done; http://172.18.8.76:28132/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.008 | search_minus_done; http://172.18.8.76:28132/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=44
0.089 | 0.003 | cgi_end;

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