GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-19 15:54:25, GGGenome : Duck genome, BGI_duck_1.0 (Apr, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KB743899.1 dna:scaffold scaffold:BGI_duck_1.0:KB743899.1:1:242252:1 REF
position: 151843-151857
ATTAGCGAAGCTGTTCGACAGATCTGATAA151843TTCATTGACAACATTCACACTTTGAGATCAGATTTTGCACTTTGA
KB742567.1 dna:scaffold scaffold:BGI_duck_1.0:KB742567.1:1:2204325:1 REF
position: 978797-978811
CTTCTCTCTTTAGATGAGAAACTAGCCATT978797AATGTTGTCAATGAATAACATGCACTGTATATTATTTATTTGCTA
KB743056.1 dna:scaffold scaffold:BGI_duck_1.0:KB743056.1:1:1014542:1 REF
position: 448668-448682
TTTGTTTTCCTTTTTTGTACCAGTTCTCAA448668AATGTTGTCAATGAATACAAACTGCATACTGAAATATAGTTTATC
KB743572.1 dna:scaffold scaffold:BGI_duck_1.0:KB743572.1:1:610904:1 REF
position: 324424-324438
GAACAATGGAAACGAGCTATGGATTATTTA324424AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG
KB742964.1 dna:scaffold scaffold:BGI_duck_1.0:KB742964.1:1:557680:1 REF
position: 373980-373994
TCTTTTCTGCGGTCATTTGAAATTATAATA373980AATGTTGTCAATGAATAAGCCATGATGCAAATTAGTTTACAAATT
KB744240.1 dna:scaffold scaffold:BGI_duck_1.0:KB744240.1:1:353536:1 REF
position: 17930-17944
GCCTGGGCAACAAGATGCCAAAGGCAGCTA17930AATGTTGTCAATGAAAAAGTAATATGACCTGGGAGGAAAAGCTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/BGI_duck_1.0/TTCATTGACAACATT
lang : en | db : BGI_duck_1.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.76:28123/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.004 | search_minus_done; http://172.18.8.76:28123/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=49
0.090 | 0.003 | cgi_end;

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