GGGenome | Results

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2025-04-05 00:47:35, GGGenome : Silkworm genome, SilkBase assembly (Nov, 2016)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Bomo_Chr8
position: 14980022-14980036

ACAAATCTCAGTAAATTTACTTTAGAATTT14980022TTCATTGACAACATTACGGAGTGAACTAACACAATGATACATAGA

Bomo_Chr9
position: 7080381-7080395

CGTGATCAAGAAGGACAGGATGTACTGCTC7080381TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGATCAGAAGTG

Bomo_Chr22
position: 5791914-5791928

ATAATCTGAAGTAGCCTATTATAATACTAT5791914TTCATTGACAACATTCACTTATAAACTATACAGATTGATTCAACT

Bomo_Chr22
position: 6781604-6781618

ACAAACGACATTTATGTTTAAAACTACCAT6781604TTCATTGACAACATTACTGTCATCATAATACGAGATATTTTATTG

Bomo_Chr24
position: 14646882-14646896

CGGGTAGTGTTATTGTTAGAACATAGGACA14646882TTCATTGACAACATTATCAAGATAAGTCTGCCTATACAGGGTGTC

Bomo_Chr6
position: 12709785-12709799

CTTTTTTGTTTTTAACTACAAAGAAGCCTT12709785AATGTTGTCAATGAAATTTTTTAAAACAGGTTAGGGTTGTCTAAT

Bomo_Chr9
position: 7044102-7044116

CACTTCTGATCCAGCCTGAGTGAAACGGAA7044102AATGTTGTCAATGAAGAGCAGTACATCCTGTCCTTCTTGATCACG

Bomo_Chr11
position: 17534086-17534100

TCTGTGCAAGTCTTTAAACTTGTATGCTAC17534086AATGTTGTCAATGAAAAATTTAACAGAAATAGCGGAAACATTCGT

Bomo_Chr15
position: 9511570-9511584

TGCACACTATAGTGTATATCTTGAATACCA9511570AATGTTGTCAATGAAATTTACTAAAATATTACCTTCGAGCTGGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
GFF format: Link | Download
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Debug Info:

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.72:28274/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.007 | search_minus_done; http://172.18.8.72:28274/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.091 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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