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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-12-27 14:26:34, GGGenome : Brassica oleracea genome, v2.1

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

C2 dna:chromosome chromosome:v2.1:C2:1:52886895:1
position: 1833539-1833553
CGTGATGCCGAGGGCCAAGATGTGTTGCTT1833539TTCATTGACAACATTTTCCGTTTCACTCAGGTGAGCTATGTTGTT
C9 dna:chromosome chromosome:v2.1:C9:1:54679868:1
position: 51450097-51450111
CGTGATGCTGAAGGCCAAGATGTGTTGCTT51450097TTCATTGACAACATTTTCCGTTTCACTCAGGTGAACTTCTATGTT
C9 dna:chromosome chromosome:v2.1:C9:1:54679868:1
position: 51455784-51455798
CGTGATGCTGAAGGCCAAGATGTGTTGCTT51455784TTCATTGACAACATTTTCCGTTTCACTCAGGTGAACTTCTATGTT
Scaffold32992 dna:scaffold scaffold:v2.1:Scaffold32992:1:204:1
position: 11-25
TGTGTTGCTT11TTCATTGACAACATTTTCCGTTTCACTCAGGTGAGCTATGTTGTT
Scaffold02081 dna:scaffold scaffold:v2.1:Scaffold02081:1:2784:1
position: 409-423
ATAACTACTTAAAAGTAAAAAATCATATCG409TTCATTGACAACATTTGGGTTGAAAAACTTATTTATAAATGCCAA
C2 dna:chromosome chromosome:v2.1:C2:1:52886895:1
position: 1827072-1827086
AACAACATAGCTCACCTGAGTGAAACGGAA1827072AATGTTGTCAATGAAAAGCAACACATCTTGGCCCTCGGCATCACG
C2 dna:chromosome chromosome:v2.1:C2:1:52886895:1
position: 19256547-19256561
ATTGGTGACTACTTGCGCATGGACGTGATG19256547AATGTTGTCAATGAAATCATCAGCTACACCATGAAGACGTGTACG
C5 dna:chromosome chromosome:v2.1:C5:1:46902585:1
position: 8963474-8963488
AGTAAATTTATAATTCATATGTCGTATGTA8963474AATGTTGTCAATGAAAACATACAAACCTGGAGTAAATTGTAATTT
C9 dna:chromosome chromosome:v2.1:C9:1:54679868:1
position: 51446567-51446581
AAGAACAGAGCTCACCTGAGTGAAACGGAA51446567AATGTTGTCAATGAAAAGCAACACATCTTGGCCTTCGGCATCACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/Braol_v2.1/TTCATTGACAACATT
lang : ja | db : Braol_v2.1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.077 | 0.069 | search_plus_done; http://172.18.8.75:28171/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.084 | 0.007 | search_minus_done; http://172.18.8.75:28171/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.087 | 0.003 | cgi_end;

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