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2025-04-05 02:56:42, GGGenome : Cross-reactivity check for COVID-19 diagnostic primers (7 CoV + 32 organisms in WHO EUL), NIHS 2020/5/1
Summary:
Results:
検索語に色がつきます(ミスマッチ ・挿入 欠失) 。
検索結果のうち50件までを表示しています。
NZ_LNXT01000014.1 Legionella birminghamensis strain CDC#1407-AL-14 Lbir_ctg015, whole genome shotgun sequence
position: 21349-21363
AATAATCTGCTCGTCACGTTGGTCGACATC21349 AATGTTGTCAATGAA AGACTTATCGATTTTTAAGCGGTCAATTTT
NC_003997.3 Bacillus anthracis str. Ames, complete sequence
position: 1526492-1526506
GCTATCTTCAATGAATATTGTCCCTTCTGG1526492 AATGTTGTCAATGAA CACCGTATTGTTAGCTGGAACCGTTCCGAT
NZ_CP009913.1 Streptococcus salivarius strain NCTC 8618 chromosome, complete genome
position: 336794-336808
AATTTGTGTTTTCATATAAAATCCTTTCAG336794 AATGTTGTCAATGAA TAAAATTGTTTAGCCAACTGAAATATCAGT
Data Export:
下記のフォーマットで最大100000件まで検索結果を取得できます。
Debug Info:
Redirect URI : https://gggenome.dbcls.jp /ja/COVID19-primercheck-EUL-20200501/TTCATTGACAACATT
lang : ja |
db : COVID19-primercheck-EUL-20200501 |
k : 0 |
strand : |
nogap : |
query_string : TTCATTGACAACATT |
format : html |
download : |
debug :
0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.76:28831/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.084 | 0.004 | search_minus_done; http://172.18.8.76:28831/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.002 | cgi_end;
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@meso_cacase at
DBCLS
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