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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-05-02 09:33:13, GGGenome : Ciona savignyi genome, CSAV 2.0 (Oct, 2005)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

reftig_0 dna:reftig reftig:CSAV2.0:reftig_0:1:3283047:1 REF
position: 2804437-2804451
ATTTGATTAGACATATGTAGTACTACAAAA2804437TTCATTGACAACATTGTACACAGTAATAAAATAAGATGTGCTAAT
reftig_156 dna:reftig reftig:CSAV2.0:reftig_156:1:1182915:1 REF
position: 659485-659499
TTGTCAAAAAAATGTGATTTTGAGTTCCCA659485TTCATTGACAACATTCTGCGAGACCATCTTCGTTTATAGAAACAG
reftig_73 dna:reftig reftig:CSAV2.0:reftig_73:1:496566:1 REF
position: 288554-288568
CCCATACGACATCGAACCACGCCGGTAAAG288554TTCATTGACAACATTGATTCTTCGGAGAGCGACACAACGACATCA
reftig_695 dna:reftig reftig:CSAV2.0:reftig_695:1:368346:1 REF
position: 298514-298528
CGAGTAAAGTGTATTTAATTATTCGTGTGT298514TTCATTGACAACATTTTGACAATAAATTAAACAAGGTTCAAACTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/CSAV2.0/TTCATTGACAACATT
lang : ja | db : CSAV2.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.76:28119/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.005 | search_minus_done; http://172.18.8.76:28119/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.085 | 0.000 | cgi_end;

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