GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-19 13:10:20, GGGenome : Green monkey genome, ChlSab1.1 (Mar, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

4 dna:chromosome chromosome:ChlSab1.1:4:1:91010382:1 REF
position: 9292900-9292914
GAGGGCCTTTCCAGCTCCAAGGTCAATGGC9292900AATGTTGTCAATGAAAGATCAGCAGGTCAGTGCCTTATACCCAGA
11 dna:chromosome chromosome:ChlSab1.1:11:1:128539186:1 REF
position: 74684012-74684026
GTATGATAAGTTTGTTCCAGAAGTTTAAAA74684012AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
18 dna:chromosome chromosome:ChlSab1.1:18:1:72318688:1 REF
position: 3425610-3425624
ACTATGCGAGCAATGGGGAGTCTCATTTTC3425610AATGTTGTCAATGAAATGAATAATTGTTATAATCTCTCCTAAAAC
22 dna:chromosome chromosome:ChlSab1.1:22:1:101219884:1 REF
position: 18519661-18519675
GCCTGTTTTTCATATGCATATGTAATAGGG18519661AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
25 dna:chromosome chromosome:ChlSab1.1:25:1:85787240:1 REF
position: 24979355-24979369
TCATAATGTGTAAAATTCCTAATGTGAGGG24979355AATGTTGTCAATGAAAAATACTTAGCATTGTTGACACACAAGGAC
3 dna:chromosome chromosome:ChlSab1.1:3:1:92142175:1 REF
position: 63217385-63217399
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA63217385TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
4 dna:chromosome chromosome:ChlSab1.1:4:1:91010382:1 REF
position: 43351105-43351119
TTAAGTCTTATTAACTTAAATTGCTATTAA43351105TTCATTGACAACATTAATAACTGTATAACAAACTATGCAAGCTTT
7 dna:chromosome chromosome:ChlSab1.1:7:1:135778131:1 REF
position: 14043245-14043259
CTTAAATCACGATCAATGTCATGTCACAGT14043245TTCATTGACAACATTTCTTCCTTTTTAGCAGTATATAAAATAGTG
7 dna:chromosome chromosome:ChlSab1.1:7:1:135778131:1 REF
position: 95403518-95403532
CAGAATATATTATCACTTTGAACACAGATT95403518TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
7 dna:chromosome chromosome:ChlSab1.1:7:1:135778131:1 REF
position: 112164397-112164411
TAAAACCTCTGATTTTGTGTAACACTCCTT112164397TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGACTACAT
7 dna:chromosome chromosome:ChlSab1.1:7:1:135778131:1 REF
position: 127465226-127465240
TTTGGACCCCCAGATCAGTCTTCATATTCT127465226TTCATTGACAACATTCATGAAGTTCTGCAGAAGTTAAATAGAATT
9 dna:chromosome chromosome:ChlSab1.1:9:1:125710982:1 REF
position: 32040642-32040656
GTTAAATGCCTCTATTCTAATTTCTGGTAG32040642TTCATTGACAACATTTGGTGTTCCTTGGCTTGGAGATGCATCACT
13 dna:chromosome chromosome:ChlSab1.1:13:1:98384682:1 REF
position: 81143559-81143573
TACCAGCTTTTGCTTTATTTTAATAACAGT81143559TTCATTGACAACATTGGCTTCTAAAATTGTGTAGAAATATTAACT
16 dna:chromosome chromosome:ChlSab1.1:16:1:75148670:1 REF
position: 13438276-13438290
GCCTCTGGGCCTGTGTTAGATGGGCCATGC13438276TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
27 dna:chromosome chromosome:ChlSab1.1:27:1:48547382:1 REF
position: 29161092-29161106
TTCTCTCAACAAAGTAGATATCGATAAATA29161092TTCATTGACAACATTTGAATTTTGTGTTTCCCAAGAGCTGTGGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ChlSab1.1/AATGTTGTCAATGAA
lang : en | db : ChlSab1.1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.76:28130/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.007 | search_minus_done; http://172.18.8.76:28130/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.093 | 0.006 | cgi_end;

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