GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-03-29 06:26:30, GGGenome : Eucalyptus grandis genome, v2.0

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chr06:29205232-29205246
TCAAGAACTAAATTATGTAGATTCCAAAAA29205232TTCATTGACAACATTGAATAAATTAAAATTTTAGGGATGACATGG
Chr08:34246771-34246785
CAGATAATTTTTTAATTATGTTGATTTTTT34246771TTCATTGACAACATTTTGGCTTTAAAATCATTATAATTATTAATT
Chr08:42244199-42244213
AGTTCAGGATCACATTTAACAAATTAAAAT42244199TTCATTGACAACATTGAACATTGGGCTAAAGATTATGGACTACAT
Chr02:17240370-17240384
GACCCATGGAAGAAGTTGCCCCCCATCCTC17240370AATGTTGTCAATGAAGTGCAATCACCTAAACTGTCAGGGATTTCA
Chr06:37994277-37994291
AAATGGACTCTTAACTTTGGTCAAATATGT37994277AATGTTGTCAATGAATTTTTAATTTGTGCAATGTGGTCTCTAAAT
Chr06:38121617-38121631
AAATGGACTCTTAACTTTGGTCAAATATGT38121617AATGTTGTCAATGAATTTTTAATTTGTGCAATATGGTCTCTGAAT
Chr06:56420150-56420164
GGACCCATGGAAGAAGTTGCCCCCATCCTC56420150AATGTTGTCAATGAAGTGCAATCACCTAAACTATCGGGGATTTCA
Chr06:56460222-56460236
GACCCATGGAAGAAGTTGCCCCCCATCCTC56460222AATGTTGTCAATGAAGTGCAATCACCTAAACTATCAGGGATTTCA
Chr09:30760665-30760679
AAATAATCTTTAAACTTTGGCTCAATGTAT30760665AATGTTGTCAATGAATTTTAATTTAATGTCTAATATGATTCCTAA
Chr09:30773737-30773751
ATATAATTTTTAAACTTTGGTTCAATTTGT30773737AATGTTGTCAATGAATTTTAACTTAATGTACAATGTGATCCCTAA
Chr09:30884804-30884818
AAATAATCTTTAAATTTTGGCTTAATGTGT30884804AATGTTGTCAATGAATTTTAGCTTAATGTGCTATGTGATCTCTAA
scaffold_90:6052-6066
AAATAATCTTTAAACTTTGGCTCAATGTAT6052AATGTTGTCAATGAATTTTAATTTAATGTCCAATATGATTCCTAA
scaffold_90:38102-38116
AAAAAATTTTTAAACTTTGGTTCAATGTGT38102AATGTTGTCAATGAATTTTAACTTAATGTACAATGTGATCCCTAA
scaffold_430:1608-1622
AAATAATCTTTAAATTTTGGCTTAATGTGT1608AATGTTGTCAATGAATTTTAGCTTAATGTGCTATGTAATCTCTAA
scaffold_464:9402-9416
ATTGTGGGGTGTAGAGATCAACACGGGATG9402AATGTTGTCAATGAAACTCCAAAGACAAAGGTAAAAGATAACTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/Egrandis_v2.0/TTCATTGACAACATT
lang : en | db : Egrandis_v2.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.099 | 0.091 | search_plus_done; http://172.18.8.74:28299/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.113 | 0.013 | search_minus_done; http://172.18.8.74:28299/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.119 | 0.006 | cgi_end;

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